Browse applications

Applications

digest

13855 runs overall, including 6 for the last 60 days. Unique users: 19

Create cryptographic hash digests of R objects

magrittr

12365 runs overall, including 8 for the last 60 days. Unique users: 12

A Forward-Pipe Operator for R

parallel

12038 runs overall, including 7 for the last 60 days. Unique users: 15

Support for Parallel computation in R

codetools

11867 runs overall, including 0 for the last 60 days. Unique users: 9

Code Analysis Tools for R

Matrix

11712 runs overall, including 1 for the last 60 days. Unique users: 14

Sparse and Dense Matrix Classes and Methods

lazyeval

11262 runs overall, including 10 for the last 60 days. Unique users: 8

Lazy

igraph

9438 runs overall, including 0 for the last 60 days. Unique users: 9

Network analysis and visualization

memoise

9335 runs overall, including 0 for the last 60 days. Unique users: 15

Memoisation of Functions

testthat

9131 runs overall, including 0 for the last 60 days. Unique users: 7 Publications: 7

Unit Testing for R

crayon

9118 runs overall, including 0 for the last 60 days. Unique users: 6

Colored Terminal Output

stringdist

8716 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 9

Approximate String Matching and String Distance Functions

rex

8515 runs overall, including 0 for the last 60 days. Unique users: 2

Friendly Regular Expressions

lintr

8486 runs overall, including 0 for the last 60 days. Unique users: 1

Static R Code Analysis

grid

5686 runs overall, including 11 for the last 60 days. Unique users: 15

The Grid Graphics Package

evaluate

5577 runs overall, including 0 for the last 60 days. Unique users: 14

Parsing and Evaluation Tools that Provide More Details than the Default

stringr

4828 runs overall, including 3 for the last 60 days. Unique users: 17

Simple

Rcpp

4073 runs overall, including 9 for the last 60 days. Unique users: 16 Publications: 108

Seamless R and C++ Integration

lattice

3984 runs overall, including 7 for the last 60 days. Unique users: 14

Lattice Graphics

plyr

3747 runs overall, including 7 for the last 60 days. Unique users: 14 Publications: 220

Tools for Splitting

yaml

3615 runs overall, including 2 for the last 60 days. Unique users: 10

Methods to convert R data to YAML and back

jsonlite

3601 runs overall, including 2 for the last 60 days. Unique users: 15

A Robust

BH

3599 runs overall, including 8 for the last 60 days. Unique users: 7

unknown

knitr

3489 runs overall, including 0 for the last 60 days. Unique users: 9

A General-Purpose Package for Dynamic Report Generation in R

reshape2

3485 runs overall, including 6 for the last 60 days. Unique users: 13 Publications: 169

Flexibly Reshape Data: A Reboot of the Reshape Package.

stringi

3441 runs overall, including 4 for the last 60 days. Unique users: 10

Character String Processing Facilities

colorspace

3378 runs overall, including 6 for the last 60 days. Unique users: 12

Color Space Manipulation

markdown

3366 runs overall, including 0 for the last 60 days. Unique users: 9

Markdown rendering for R

formatR

3333 runs overall, including 0 for the last 60 days. Unique users: 9

Format R Code Automatically

highr

3333 runs overall, including 0 for the last 60 days. Unique users: 9

Syntax highlighting for R

gtable

3328 runs overall, including 7 for the last 60 days. Unique users: 12

Arrange 'Grobs' in Tables

foreach

3304 runs overall, including 0 for the last 60 days. Unique users: 7

Provides Foreach Looping Construct for R

iterators

3304 runs overall, including 0 for the last 60 days. Unique users: 7

Iterator construct for R

MASS

3295 runs overall, including 6 for the last 60 days. Unique users: 14

Support Functions and Datasets for Venables and Ripley's MASS

RColorBrewer

3283 runs overall, including 6 for the last 60 days. Unique users: 12

ColorBrewer Palettes

rstudioapi

3234 runs overall, including 1 for the last 60 days. Unique users: 14

Safely Access the RStudio API

scales

3230 runs overall, including 6 for the last 60 days. Unique users: 12

Scale Functions for Visualization

labeling

3226 runs overall, including 6 for the last 60 days. Unique users: 12

Axis Labeling

dichromat

3226 runs overall, including 6 for the last 60 days. Unique users: 12

Color Schemes for Dichromats

munsell

3226 runs overall, including 6 for the last 60 days. Unique users: 12

Munsell colour system

ggplot2

3226 runs overall, including 6 for the last 60 days. Unique users: 12

An Implementation of the Grammar of Graphics

httr

3221 runs overall, including 2 for the last 60 days. Unique users: 14

Tools for Working with URLs and HTTP

R6

3161 runs overall, including 8 for the last 60 days. Unique users: 12

Classes with reference semantics

RCurl

3149 runs overall, including 0 for the last 60 days. Unique users: 14

General network

proto

3120 runs overall, including 0 for the last 60 days. Unique users: 11

Prototype object-based programming

whisker

3087 runs overall, including 0 for the last 60 days. Unique users: 15

{{mustache}} for R

devtools

3035 runs overall, including 0 for the last 60 days. Unique users: 14

Tools to Make Developing R Packages Easier

roxygen2

3035 runs overall, including 0 for the last 60 days. Unique users: 12

In-source Documentation for R

bitops

3018 runs overall, including 0 for the last 60 days. Unique users: 14

Bitwise Operations

doParallel

2815 runs overall, including 0 for the last 60 days. Unique users: 5

Foreach parallel adaptor for the parallel package

git2r

2768 runs overall, including 0 for the last 60 days. Unique users: 7

Provides Access to Git Repositories

rversions

2752 runs overall, including 0 for the last 60 days. Unique users: 6

Query 'R' Versions

DBI

2688 runs overall, including 8 for the last 60 days. Unique users: 9

R Database Interface

assertthat

2470 runs overall, including 8 for the last 60 days. Unique users: 9

Easy pre and post assertions.

XML

2346 runs overall, including 0 for the last 60 days. Unique users: 10

Tools for Parsing and Generating XML Within R and S-Plus

dplyr

2333 runs overall, including 8 for the last 60 days. Unique users: 7

A Grammar of Data Manipulation

curl

2220 runs overall, including 2 for the last 60 days. Unique users: 7

A Modern and Flexible Web Client for R

glmnet

2140 runs overall, including 0 for the last 60 days. Unique users: 3 Publications: 1445

unknown

gridExtra

2087 runs overall, including 2 for the last 60 days. Unique users: 9

functions in Grid graphics

brew

2038 runs overall, including 0 for the last 60 days. Unique users: 7

Templating Framework for Report Generation

mime

1804 runs overall, including 2 for the last 60 days. Unique users: 12

Map Filenames to MIME Types

caTools

1682 runs overall, including 0 for the last 60 days. Unique users: 9

Tools: moving window statistics

reshape

1647 runs overall, including 0 for the last 60 days. Unique users: 5 Publications: 169

Flexibly reshape data.

chron

1523 runs overall, including 1 for the last 60 days. Unique users: 8

Chronological Objects which can Handle Dates and Times

data.table

1521 runs overall, including 0 for the last 60 days. Unique users: 8

unknown

htmltools

1445 runs overall, including 2 for the last 60 days. Unique users: 9

Tools for HTML

gtools

1385 runs overall, including 0 for the last 60 days. Unique users: 8

Various R Programming Tools

rmarkdown

1349 runs overall, including 0 for the last 60 days. Unique users: 7

Dynamic Documents for R

gdata

1196 runs overall, including 0 for the last 60 days. Unique users: 8

Various R programming tools for data manipulation

xml2

1148 runs overall, including 0 for the last 60 days. Unique users: 3

Parse XML

data.table

1135 runs overall, including 0 for the last 60 days. Unique users: 6

unknown

KernSmooth

1095 runs overall, including 0 for the last 60 days. Unique users: 11

Functions for kernel smoothing for Wand & Jones

BiocGenerics

1091 runs overall, including 0 for the last 60 days. Unique users: 7

S4 generic functions for Bioconductor

RSQLite

1084 runs overall, including 0 for the last 60 days. Unique users: 7

SQLite Interface for R

sacbox

1055 runs overall, including 0 for the last 60 days. Unique users: 1

sacbox

lubridate

999 runs overall, including 2 for the last 60 days. Unique users: 7 Publications: 19

Make Dealing with Dates a Little Easier

zoo

872 runs overall, including 1 for the last 60 days. Unique users: 6 Publications: 88

S3 Infrastructure for Regular and Irregular Time Series

cluster

851 runs overall, including 0 for the last 60 days. Unique users: 10

Cluster Analysis Extended Rousseeuw et al.

stats4

832 runs overall, including 0 for the last 60 days. Unique users: 9

Statistical Functions using S4 Classes

rjson

791 runs overall, including 0 for the last 60 days. Unique users: 10

JSON for R

xtable

763 runs overall, including 0 for the last 60 days. Unique users: 10

Export Tables to LaTeX or HTML

tidyr

755 runs overall, including 2 for the last 60 days. Unique users: 7

Easily Tidy Data with `spread

htmlwidgets

721 runs overall, including 2 for the last 60 days. Unique users: 7

HTML Widgets for R

nlme

717 runs overall, including 1 for the last 60 days. Unique users: 11

Linear and Nonlinear Mixed Effects Models

splines

708 runs overall, including 0 for the last 60 days. Unique users: 17

Regression Spline Functions and Classes

quadprog

704 runs overall, including 0 for the last 60 days. Unique users: 6

unknown

Biobase

701 runs overall, including 0 for the last 60 days. Unique users: 4 Publications: 6221

Biobase: Base functions for Bioconductor

BiocParallel

696 runs overall, including 0 for the last 60 days. Unique users: 3

Bioconductor facilities for parallel evaluation

BBmisc

695 runs overall, including 0 for the last 60 days. Unique users: 2

Miscellaneous Helper Functions for B. Bischl

checkmate

695 runs overall, including 0 for the last 60 days. Unique users: 2

Fast and Versatile Argument Checks

foreign

693 runs overall, including 0 for the last 60 days. Unique users: 10

Read Data Stored by Minitab

lmtest

682 runs overall, including 0 for the last 60 days. Unique users: 5

Testing Linear Regression Models

gplots

680 runs overall, including 0 for the last 60 days. Unique users: 7

Various R Programming Tools for Plotting Data

sorvi

675 runs overall, including 0 for the last 60 days. Unique users: 1

Finnish Open Government Data Toolkit

IRanges

644 runs overall, including 0 for the last 60 days. Unique users: 5 Publications: 144

Infrastructure for manipulating intervals on sequences

S4Vectors

642 runs overall, including 0 for the last 60 days. Unique users: 4

S4 implementation of vectors and lists

AnnotationDbi

636 runs overall, including 0 for the last 60 days. Unique users: 4

Annotation Database Interface

survival

620 runs overall, including 0 for the last 60 days. Unique users: 12

Survival Analysis

GenomeInfoDb

617 runs overall, including 0 for the last 60 days. Unique users: 3

unknown

maps

592 runs overall, including 0 for the last 60 days. Unique users: 8

Draw Geographical Maps

pander

552 runs overall, including 0 for the last 60 days. Unique users: 3

An R Pandoc Writer

ape

551 runs overall, including 0 for the last 60 days. Unique users: 4 Publications: 2727

Analyses of Phylogenetics and Evolution

nnet

550 runs overall, including 0 for the last 60 days. Unique users: 9

Feed-forward Neural Networks and Multinomial Log-Linear Models

annotate

549 runs overall, including 0 for the last 60 days. Unique users: 2

Annotation for microarrays

latticeExtra

544 runs overall, including 0 for the last 60 days. Unique users: 7

Extra Graphical Utilities Based on Lattice

rgl

541 runs overall, including 0 for the last 60 days. Unique users: 5

3D visualization device system

rpart

539 runs overall, including 0 for the last 60 days. Unique users: 9

Recursive Partitioning

snow

528 runs overall, including 0 for the last 60 days. Unique users: 3

Simple Network of Workstations

Formula

526 runs overall, including 0 for the last 60 days. Unique users: 7 Publications: 14

Extended Model Formulas

acepack

522 runs overall, including 0 for the last 60 days. Unique users: 7

ace

selectr

520 runs overall, including 0 for the last 60 days. Unique users: 3

Translate CSS Selectors to XPath Expressions

rvest

520 runs overall, including 0 for the last 60 days. Unique users: 3

Easily Harvest

Hmisc

514 runs overall, including 0 for the last 60 days. Unique users: 7

Harrell Miscellaneous

DT

498 runs overall, including 0 for the last 60 days. Unique users: 1

A Wrapper of the JavaScript Library 'DataTables'

mgcv

484 runs overall, including 1 for the last 60 days. Unique users: 10 Publications: 646

Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation

compiler

475 runs overall, including 0 for the last 60 days. Unique users: 5

The R Compiler Package

plotly

470 runs overall, including 2 for the last 60 days. Unique users: 5

Create Interactive Web Graphics via 'plotly.js'

xts

464 runs overall, including 0 for the last 60 days. Unique users: 2

Extensible Time Series

manipulate

459 runs overall, including 0 for the last 60 days. Unique users: 1

Interactive Plots for RStudio

PerformanceAnalytics

456 runs overall, including 0 for the last 60 days. Unique users: 1

Econometric tools for performance and risk analysis

boot

455 runs overall, including 0 for the last 60 days. Unique users: 6

Bootstrap Functions

zlibbioc

448 runs overall, including 0 for the last 60 days. Unique users: 4

An R packaged zlib-1.2.5

fields

443 runs overall, including 0 for the last 60 days. Unique users: 5

Tools for Spatial Data

spam

443 runs overall, including 0 for the last 60 days. Unique users: 5 Publications: 30

SPArse Matrix

genefilter

436 runs overall, including 0 for the last 60 days. Unique users: 2

genefilter: methods for filtering genes from microarray experiments

sparkline

419 runs overall, including 0 for the last 60 days. Unique users: 1

jQuery Sparkline HTML widget for R

XVector

409 runs overall, including 0 for the last 60 days. Unique users: 4

unknown

Biostrings

405 runs overall, including 0 for the last 60 days. Unique users: 4

String objects representing biological sequences

GenomicRanges

388 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 144

Representation and manipulation of genomic intervals and variables defined along a genome

vegan

387 runs overall, including 0 for the last 60 days. Unique users: 5

Community Ecology Package

permute

386 runs overall, including 0 for the last 60 days. Unique users: 5

Functions for Generating Restricted Permutations of Data

phyloseq

383 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 195

Handling and analysis of high-throughput microbiome census data

futile.options

379 runs overall, including 0 for the last 60 days. Unique users: 2

Futile options management

lambda.r

379 runs overall, including 0 for the last 60 days. Unique users: 2

Modeling Data with Functional Programming

futile.logger

379 runs overall, including 0 for the last 60 days. Unique users: 2

A Logging Utility for R

futile.options

379 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

futile.logger

379 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

lambda.r

379 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

microbiome

377 runs overall, including 0 for the last 60 days. Unique users: 1

Tools for microbiome analysis

tseries

375 runs overall, including 0 for the last 60 days. Unique users: 2

Time Series Analysis and Computational Finance

moments

375 runs overall, including 0 for the last 60 days. Unique users: 1

Moments

locfit

375 runs overall, including 0 for the last 60 days. Unique users: 5

Local Regression

nortest

374 runs overall, including 0 for the last 60 days. Unique users: 1

Tests for Normality

som

374 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

maptree

374 runs overall, including 0 for the last 60 days. Unique users: 2

Mapping

Kendall

374 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

earlywarnings

373 runs overall, including 0 for the last 60 days. Unique users: 1

Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries

tgp

373 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

ade4

373 runs overall, including 0 for the last 60 days. Unique users: 4 Publications: 954

Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences

RcppArmadillo

370 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 30

unknown

bibliographica

370 runs overall, including 0 for the last 60 days. Unique users: 1

Bibliographic Data Analysis

geneplotter

369 runs overall, including 0 for the last 60 days. Unique users: 2

Graphics related functions for Bioconductor

ROCR

368 runs overall, including 0 for the last 60 days. Unique users: 3 Publications: 832

Visualizing the Performance of Scoring Classifiers

multtest

368 runs overall, including 0 for the last 60 days. Unique users: 1

Resampling-based multiple hypothesis testing

biom

368 runs overall, including 0 for the last 60 days. Unique users: 1

An interface package

DESeq2

368 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 611

Differential gene expression analysis based on the negative binomial distribution

OAIHarvester

366 runs overall, including 0 for the last 60 days. Unique users: 2

Harvest Metadata Using OAI-PMH v2.0

BiocInstaller

362 runs overall, including 0 for the last 60 days. Unique users: 8

Install/Update Bioconductor and CRAN Packages

pheatmap

361 runs overall, including 0 for the last 60 days. Unique users: 1

Pretty Heatmaps

RGCCA

361 runs overall, including 0 for the last 60 days. Unique users: 1

RGCCA and Sparse GCCA for multi-block data analysis

mixOmics

361 runs overall, including 0 for the last 60 days. Unique users: 1

Omics Data Integration Project

rdryad

361 runs overall, including 0 for the last 60 days. Unique users: 1

Access for Dryad Web Services

base64enc

345 runs overall, including 2 for the last 60 days. Unique users: 6

Tools for base64 encoding

packrat

341 runs overall, including 0 for the last 60 days. Unique users: 3

A Dependency Management System for Projects and their R Package Dependencies

googleVis

341 runs overall, including 0 for the last 60 days. Unique users: 3

R Interface to Google Charts

sp

334 runs overall, including 0 for the last 60 days. Unique users: 5

Classes and Methods for Spatial Data

preprocessCore

333 runs overall, including 0 for the last 60 days. Unique users: 3

A collection of pre-processing functions

viridis

332 runs overall, including 2 for the last 60 days. Unique users: 4

Default Color Maps from 'matplotlib'

sendmailR

317 runs overall, including 0 for the last 60 days. Unique users: 2

send email using R

BatchJobs

317 runs overall, including 0 for the last 60 days. Unique users: 2

Batch Computing with R

fail

317 runs overall, including 0 for the last 60 days. Unique users: 2

File Abstraction Interface Layer

tcltk

316 runs overall, including 0 for the last 60 days. Unique users: 9

Tcl/Tk Interface

ggthemes

314 runs overall, including 0 for the last 60 days. Unique users: 2

Extra Themes

extrafont

312 runs overall, including 0 for the last 60 days. Unique users: 2

Tools for using fonts

Rttf2pt1

312 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

extrafontdb

312 runs overall, including 0 for the last 60 days. Unique users: 2

Package for holding the database for the extrafont package

directlabels

310 runs overall, including 0 for the last 60 days. Unique users: 1

Direct Labels for Multicolor Plots

graph

308 runs overall, including 0 for the last 60 days. Unique users: 3

graph: A package to handle graph data structures

gclus

306 runs overall, including 0 for the last 60 days. Unique users: 3

Clustering Graphics

seriation

306 runs overall, including 0 for the last 60 days. Unique users: 3

Infrastructure for Ordering Objects Using Seriation

TSP

306 runs overall, including 0 for the last 60 days. Unique users: 3

Traveling Salesperson Problem

scatterplot3d

303 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 63

3D Scatter Plot

registry

300 runs overall, including 0 for the last 60 days. Unique users: 1

Infrastructure for R Package Registries

arulesViz

299 runs overall, including 0 for the last 60 days. Unique users: 1

Visualizing Association Rules and Frequent Itemsets

vcd

299 runs overall, including 0 for the last 60 days. Unique users: 1

Visualizing Categorical Data

arules

299 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

forecast

294 runs overall, including 0 for the last 60 days. Unique users: 1

Forecasting Functions for Time Series and Linear Models

babynames

293 runs overall, including 0 for the last 60 days. Unique users: 1

US Baby Names 1880-2014

gender

282 runs overall, including 0 for the last 60 days. Unique users: 2

Predict Gender from Names Using Historical Data

visualizationQualityControl

280 runs overall, including 0 for the last 60 days. Unique users: 1

Development of visualization methods for quality control

affy

280 runs overall, including 0 for the last 60 days. Unique users: 3 Publications: 3292

Methods for Affymetrix Oligonucleotide Arrays

affyio

280 runs overall, including 0 for the last 60 days. Unique users: 3

Tools for parsing Affymetrix data files

bit

278 runs overall, including 0 for the last 60 days. Unique users: 3

A Class for Vectors of 1-Bit Booleans

slidify

266 runs overall, including 0 for the last 60 days. Unique users: 3

Generate reproducible html5 slides from R markdown

RPA

265 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 27

RPA: Robust Probabilistic Averaging for probe-level analysis

bit64

258 runs overall, including 0 for the last 60 days. Unique users: 2

A S3 Class for Vectors of 64bit Integers

slidifyLibraries

241 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

randomForest

238 runs overall, including 0 for the last 60 days. Unique users: 2

Breiman and Cutler's random forests for classification and regression

e1071

238 runs overall, including 0 for the last 60 days. Unique users: 3

Misc Functions of the Department of Statistics

class

238 runs overall, including 0 for the last 60 days. Unique users: 4

Functions for Classification

tau

237 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

shiny

237 runs overall, including 0 for the last 60 days. Unique users: 6

Tidy R code using formatR

V8

235 runs overall, including 0 for the last 60 days. Unique users: 4

unknown

robustbase

232 runs overall, including 0 for the last 60 days. Unique users: 2

Basic Robust Statistics

DEoptimR

232 runs overall, including 0 for the last 60 days. Unique users: 2

Differential Evolution Optimization in Pure R

gistr

231 runs overall, including 0 for the last 60 days. Unique users: 2

Work with GitHub Gists

slam

231 runs overall, including 0 for the last 60 days. Unique users: 6

Sparse Lightweight Arrays and Matrices

cvTools

229 runs overall, including 0 for the last 60 days. Unique users: 1

Cross-validation tools for regression models

NLP

228 runs overall, including 0 for the last 60 days. Unique users: 4

Natural Language Processing Infrastructure

randomForest.powerAnalysis

227 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

rgdal

226 runs overall, including 0 for the last 60 days. Unique users: 4

Bindings for the Geospatial Data Abstraction Library

tm

226 runs overall, including 0 for the last 60 days. Unique users: 4

Text Mining Package

GO.db

224 runs overall, including 0 for the last 60 days. Unique users: 3

unknown

rpud

218 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

httpuv

215 runs overall, including 0 for the last 60 days. Unique users: 6

HTTP and WebSocket server library

rlist

215 runs overall, including 0 for the last 60 days. Unique users: 1

A Toolbox for Non-Tabular Data Manipulation

GO.db

204 runs overall, including 0 for the last 60 days. Unique users: 3

unknown

PKI

202 runs overall, including 0 for the last 60 days. Unique users: 3

Public Key Infrastucture for R Based on the X.509 Standard

rsconnect

201 runs overall, including 0 for the last 60 days. Unique users: 3

Deployment Interface for R Markdown Documents and Shiny Applications

combinat

194 runs overall, including 0 for the last 60 days. Unique users: 1

combinatorics utilities

RcppEigen

186 runs overall, including 0 for the last 60 days. Unique users: 5 Publications: 6

unknown

RCytoscape

185 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 46

Display and manipulate graphs in Cytoscape

randomForest.powerAnalysis

181 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

GOstats

180 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 639

Tools for manipulating GO and microarrays.

GSEABase

180 runs overall, including 0 for the last 60 days. Unique users: 1

Gene set enrichment data structures and methods

rgbif

180 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to the Global 'Biodiversity' Information Facility 'API'

Category

180 runs overall, including 0 for the last 60 days. Unique users: 1

Category Analysis

maptools

176 runs overall, including 0 for the last 60 days. Unique users: 4

Tools for Reading and Handling Spatial Objects

dendsort

171 runs overall, including 0 for the last 60 days. Unique users: 1

Modular Leaf Ordering Methods for Dendrogram Nodes

qap

170 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

ff

169 runs overall, including 0 for the last 60 days. Unique users: 2

Memory-Efficient Storage of Large Data on Disk and Fast Access Functions

rgeos

169 runs overall, including 0 for the last 60 days. Unique users: 3

Interface to Geometry Engine - Open Source

bold

169 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to Bold Systems API

hwriter

168 runs overall, including 0 for the last 60 days. Unique users: 1

HTML Writer - Outputs R objects in HTML format

pryr

166 runs overall, including 0 for the last 60 days. Unique users: 4

Tools for Computing on the Language

Taxonstand

165 runs overall, including 0 for the last 60 days. Unique users: 1

Taxonomic Standardization of Plant Species Names

rJava

164 runs overall, including 0 for the last 60 days. Unique users: 6

Low-level R to Java interface

shinyBS

162 runs overall, including 0 for the last 60 days. Unique users: 2

Twitter Bootstrap Components for Shiny

shinyAce

162 runs overall, including 0 for the last 60 days. Unique users: 2

Ace Editor Bindings for Shiny

editR

161 runs overall, including 0 for the last 60 days. Unique users: 1

A basic Rmarkdown editor with instant preview

shinyFiles

161 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

taxize

160 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 13

Taxonomic Information from Around the Web

microbenchmark

158 runs overall, including 0 for the last 60 days. Unique users: 2

Accurate Timing Functions

RSelenium

158 runs overall, including 0 for the last 60 days. Unique users: 2

R bindings for Selenium WebDriver.

sqldf

157 runs overall, including 0 for the last 60 days. Unique users: 2

Perform SQL Selects on R Data Frames

gsubfn

157 runs overall, including 0 for the last 60 days. Unique users: 2

Utilities for strings and function arguments.

XMLRPC

156 runs overall, including 0 for the last 60 days. Unique users: 4

Remote Procedure Call

shape

156 runs overall, including 0 for the last 60 days. Unique users: 3

Functions for plotting graphical shapes

circlize

155 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 13

Circular Visualization

GlobalOptions

155 runs overall, including 0 for the last 60 days. Unique users: 2

Generate Functions to Get or Set Global Options

GetoptLong

154 runs overall, including 0 for the last 60 days. Unique users: 1

Parsing Command-Line Arguments and Variable Interpolation

ComplexHeatmap

153 runs overall, including 0 for the last 60 days. Unique users: 1

Making Complex Heatmaps

installr

151 runs overall, including 0 for the last 60 days. Unique users: 2

Using R to Install Stuff

quantmod

151 runs overall, including 0 for the last 60 days. Unique users: 1

Quantitative Financial Modelling Framework

TTR

151 runs overall, including 0 for the last 60 days. Unique users: 1

Technical Trading Rules

shinyapps

151 runs overall, including 0 for the last 60 days. Unique users: 3

Deployment Interface for Shiny Applications

png

150 runs overall, including 0 for the last 60 days. Unique users: 7

Read and write PNG images

checkpoint

150 runs overall, including 0 for the last 60 days. Unique users: 2

Install Packages from Snapshots on the Checkpoint Server for Reproducibility

Rdym

150 runs overall, including 0 for the last 60 days. Unique users: 1

A "Did You Mean?" Utility for R

assertr

149 runs overall, including 0 for the last 60 days. Unique users: 1

Assertive Programming for R Analysis Pipelines

IBrokers

149 runs overall, including 0 for the last 60 days. Unique users: 1

R API to Interactive Brokers Trader Workstation

Rook

149 runs overall, including 0 for the last 60 days. Unique users: 1

Rook - a web server interface for R

github

149 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

EDAWR

149 runs overall, including 0 for the last 60 days. Unique users: 1

Expert Data Analysis with R

doSNOW

149 runs overall, including 0 for the last 60 days. Unique users: 1

Foreach parallel adaptor for the snow package

bmc

148 runs overall, including 0 for the last 60 days. Unique users: 1

Search the BiomedCentral API and get full text articles.

itertools

148 runs overall, including 0 for the last 60 days. Unique users: 1

Iterator Tools

gmodels

148 runs overall, including 0 for the last 60 days. Unique users: 2

Various R Programming Tools for Model Fitting

pipeR

146 runs overall, including 0 for the last 60 days. Unique users: 1

Multi-Paradigm Pipeline Implementation

qdapRegex

145 runs overall, including 0 for the last 60 days. Unique users: 1

Regular Expression Removal

dygraphs

145 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to Dygraphs Interactive Time Series Charting Library

qdapDictionaries

145 runs overall, including 0 for the last 60 days. Unique users: 1

Dictionaries and Word Lists for the 'qdap' Package

openxlsx

145 runs overall, including 0 for the last 60 days. Unique users: 2

Read

qdapTools

145 runs overall, including 0 for the last 60 days. Unique users: 1

Tools for the qdap Package

stackr

145 runs overall, including 0 for the last 60 days. Unique users: 2

Client for the Stack Exchange API

shinySignals

144 runs overall, including 0 for the last 60 days. Unique users: 1

Stream functions from shiny.

systemR

144 runs overall, including 0 for the last 60 days. Unique users: 1

systemR: A package to interact with the OS

streamR

144 runs overall, including 0 for the last 60 days. Unique users: 1

Access to Twitter Streaming API via R

spark

144 runs overall, including 0 for the last 60 days. Unique users: 1

Sparklines in the 'R' Terminal

shinythemes

144 runs overall, including 0 for the last 60 days. Unique users: 1

Themes for Shiny

reportsWS

144 runs overall, including 0 for the last 60 days. Unique users: 1

Interactive Reports with R Markdown and Shiny Workshop

Rserve

144 runs overall, including 0 for the last 60 days. Unique users: 1

Binary R server

shinydashboard

144 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

Rwebdriver

144 runs overall, including 0 for the last 60 days. Unique users: 1

R binding to the Webdriver API

shinyRGL

144 runs overall, including 0 for the last 60 days. Unique users: 1

Shiny Wrappers for RGL

functional

144 runs overall, including 0 for the last 60 days. Unique users: 1

Curry

RODBC

144 runs overall, including 0 for the last 60 days. Unique users: 1

ODBC Database Access

ProjectTemplate

143 runs overall, including 0 for the last 60 days. Unique users: 1

Automates the Creation of New Statistical Analysis Projects

downloader

142 runs overall, including 0 for the last 60 days. Unique users: 2

Download Files over HTTP and HTTPS

HistData

142 runs overall, including 0 for the last 60 days. Unique users: 1

Data sets from the history of statistics and data visualization

rmr2

142 runs overall, including 0 for the last 60 days. Unique users: 1

R and Hadoop Streaming Connector

quickcheck

142 runs overall, including 0 for the last 60 days. Unique users: 1

Support writing randomized unit tests

mapproj

141 runs overall, including 0 for the last 60 days. Unique users: 4

unknown

ropkgs

141 runs overall, including 0 for the last 60 days. Unique users: 2

Install rOpenSci Packages

RGA

138 runs overall, including 0 for the last 60 days. Unique users: 1

A Google Analytics API Client

rpudplus

137 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

plotrix

136 runs overall, including 0 for the last 60 days. Unique users: 4

Various Plotting Functions

optmatch

134 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 100

Functions for Optimal Matching

rPython

134 runs overall, including 0 for the last 60 days. Unique users: 1

Package Allowing R to Call Python

UsingR

134 runs overall, including 0 for the last 60 days. Unique users: 1

Data Sets

ggbiplot

132 runs overall, including 0 for the last 60 days. Unique users: 1

A ggplot2 based biplot

xlsxjars

129 runs overall, including 0 for the last 60 days. Unique users: 2

Package required POI jars for the xlsx package

wordcloud

129 runs overall, including 0 for the last 60 days. Unique users: 3

Word Clouds

xlsx

129 runs overall, including 0 for the last 60 days. Unique users: 2

Read

fastcluster

128 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 49

Fast hierarchical clustering routines for R and Python

reports

127 runs overall, including 0 for the last 60 days. Unique users: 1

Assist the Workflow of Writing Academic Articles and Other Reports

openNLP

126 runs overall, including 0 for the last 60 days. Unique users: 1

Apache OpenNLP Tools Interface

openNLPdata

126 runs overall, including 0 for the last 60 days. Unique users: 1

Apache OpenNLP Jars and Basic English Language Models

qdap

126 runs overall, including 0 for the last 60 days. Unique users: 1

Bridging the Gap Between Qualitative Data and Quantitative Analysis

venneuler

126 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

CESB.SBC.breastCancer

120 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

Cairo

119 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

org.Hs.eg.db

118 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

diptest

117 runs overall, including 0 for the last 60 days. Unique users: 1

Hartigan's Dip Test Statistic for Unimodality - Corrected

SparseM

110 runs overall, including 0 for the last 60 days. Unique users: 7

Sparse Linear Algebra

rvertnet

109 runs overall, including 0 for the last 60 days. Unique users: 1

Search VertNet

twitteR

109 runs overall, including 0 for the last 60 days. Unique users: 1

R Based Twitter Client

quantreg

107 runs overall, including 0 for the last 60 days. Unique users: 6

Quantile Regression

RMySQL

107 runs overall, including 0 for the last 60 days. Unique users: 1

R interface to the MySQL database

ridigbio

107 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to the iDigBio Data API

rebird

106 runs overall, including 0 for the last 60 days. Unique users: 1

R Client for the eBird Database of Bird Observations

jpeg

106 runs overall, including 0 for the last 60 days. Unique users: 6

unknown

HITChipDB

106 runs overall, including 0 for the last 60 days. Unique users: 1

HITChipDB

WGCNA

105 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 861

Weighted Correlation Network Analysis

Rstem

104 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

RDCOMClient

104 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

NMF

103 runs overall, including 0 for the last 60 days. Unique users: 3 Publications: 78

Algorithms and Framework for Nonnegative Matrix Factorization

irlba

103 runs overall, including 0 for the last 60 days. Unique users: 3

Fast Truncated SVD

rbison

102 runs overall, including 0 for the last 60 days. Unique users: 1

R Interface to the USGS BISON API

AntWeb

102 runs overall, including 0 for the last 60 days. Unique users: 1

programmatic interface to the AntWeb

ecoengine

102 runs overall, including 0 for the last 60 days. Unique users: 1

Programmatic Interface to the API Serving UC Berkeley's Natural History Data

leafletR

102 runs overall, including 0 for the last 60 days. Unique users: 1

Interactive Web-Maps Based on the Leaflet JavaScript Library

spocc

99 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to Species Occurrence Data Sources

RgoogleMaps

99 runs overall, including 0 for the last 60 days. Unique users: 4 Publications: 3

Overlays on Google map tiles in R

geosphere

99 runs overall, including 0 for the last 60 days. Unique users: 4

Spherical Trigonometry

rmfNotifier

98 runs overall, including 0 for the last 60 days. Unique users: 1

Notifies @rmflight

ggmap

98 runs overall, including 0 for the last 60 days. Unique users: 4 Publications: 34

Spatial Visualization with ggplot2

Rdocumentation

97 runs overall, including 0 for the last 60 days. Unique users: 1

Integrate R with Rdocumentation.org

inline

95 runs overall, including 0 for the last 60 days. Unique users: 1

inline input test for shinybootstrap2

R.methodsS3

94 runs overall, including 0 for the last 60 days. Unique users: 6

S3 Methods Simplified

rstan

94 runs overall, including 0 for the last 60 days. Unique users: 1

R Interface to Stan

openssl

93 runs overall, including 2 for the last 60 days. Unique users: 3

Bindings to OpenSSL

lme4

92 runs overall, including 0 for the last 60 days. Unique users: 5

Linear Mixed-Effects Models using 'Eigen' and S4

minqa

92 runs overall, including 0 for the last 60 days. Unique users: 5

Derivative-free optimization algorithms by quadratic approximation

nloptr

92 runs overall, including 0 for the last 60 days. Unique users: 5

R interface to NLopt

d3Network

91 runs overall, including 0 for the last 60 days. Unique users: 2

Tools for creating D3 JavaScript network

categoryComparev2

91 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

estc

91 runs overall, including 0 for the last 60 days. Unique users: 1

English Short Title Catalogue

opencpu

87 runs overall, including 0 for the last 60 days. Unique users: 2

Embedded Scientific Computing and Reproducible Research with R

pbkrtest

82 runs overall, including 0 for the last 60 days. Unique users: 4 Publications: 64

Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison

rnoaa

81 runs overall, including 0 for the last 60 days. Unique users: 1

NOAA Climate Data from R

networkD3

80 runs overall, including 0 for the last 60 days. Unique users: 2

D3 JavaScript Network Graphs from R

car

80 runs overall, including 0 for the last 60 days. Unique users: 4

Companion to Applied Regression

df2json

75 runs overall, including 0 for the last 60 days. Unique users: 1

Convert a dataframe to JSON

bdsmatrix

74 runs overall, including 0 for the last 60 days. Unique users: 1

Routines for Block Diagonal Symmetric matrices

org.Hs.eg.db

72 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

rapport

71 runs overall, including 0 for the last 60 days. Unique users: 1

A report templating system

bookdown

71 runs overall, including 0 for the last 60 days. Unique users: 1

Authoring Books with R Markdown

mvtnorm

69 runs overall, including 0 for the last 60 days. Unique users: 5

Multivariate Normal and t Distributions

jqr

68 runs overall, including 0 for the last 60 days. Unique users: 1

Client for 'jq'

AnnotationForge

67 runs overall, including 0 for the last 60 days. Unique users: 1

Code for Building Annotation Database Packages

rworldmap

67 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 19

Mapping Global Data

RBGL

67 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

categoryCompare2

65 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

turner

61 runs overall, including 0 for the last 60 days. Unique users: 1

Turn vectors and lists of vectors into indexed structures

tester

61 runs overall, including 0 for the last 60 days. Unique users: 1

Tests and checks characteristics of R objects

matrixStats

60 runs overall, including 0 for the last 60 days. Unique users: 3

Functions that Apply to Rows and Columns of Matrices

dynamicTreeCut

59 runs overall, including 0 for the last 60 days. Unique users: 2

Methods for detection of clusters in hierarchical clustering dendrograms.

impute

59 runs overall, including 0 for the last 60 days. Unique users: 2

Impute missing values by automated variable selection

sotkanet

58 runs overall, including 0 for the last 60 days. Unique users: 1

Tools for Sotkanet Open Data Portal

STRINGDatabaseManipulation

58 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

profileModel

57 runs overall, including 0 for the last 60 days. Unique users: 1

Tools for profiling inference functions for various model classes

brglm

57 runs overall, including 0 for the last 60 days. Unique users: 1

Bias reduction in binomial-response generalized linear models.

leaflet

57 runs overall, including 0 for the last 60 days. Unique users: 3

unknown

coda

56 runs overall, including 5 for the last 60 days. Unique users: 5

Output Analysis and Diagnostics for MCMC

rstudio

53 runs overall, including 1 for the last 60 days. Unique users: 4

Tools and Utilities for RStudio

MatrixModels

52 runs overall, including 0 for the last 60 days. Unique users: 2

Modelling with Sparse And Dense Matrices

hgu133plus2.db

51 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

R.oo

50 runs overall, including 0 for the last 60 days. Unique users: 6

R Object-Oriented Programming with or without References

limma

50 runs overall, including 0 for the last 60 days. Unique users: 3

Linear Models for Microarray Data

tmcn

49 runs overall, including 0 for the last 60 days. Unique users: 1

A Text mining toolkit for international characters especially for Chinese.

cowplot

49 runs overall, including 0 for the last 60 days. Unique users: 1

C. O. Wilke-approved plots using ggplot2

lipidsearchprocessing

48 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

traits

47 runs overall, including 0 for the last 60 days. Unique users: 1

Species Trait Data from Around the Web

caret

47 runs overall, including 0 for the last 60 days. Unique users: 1

Classification and Regression Training

rCharts

46 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

Rgraphviz

45 runs overall, including 0 for the last 60 days. Unique users: 2

Provides plotting capabilities for R graph objects

R.oo

44 runs overall, including 0 for the last 60 days. Unique users: 6

unknown

R.methodsS3

44 runs overall, including 0 for the last 60 days. Unique users: 6

unknown

R.utils

44 runs overall, including 0 for the last 60 days. Unique users: 6

unknown

animation

44 runs overall, including 0 for the last 60 days. Unique users: 4 Publications: 13

A Gallery of Animations in Statistics and Utilities to Create Animations

BradleyTerry2

44 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 22

Bradley-Terry Models

packagestructure

43 runs overall, including 0 for the last 60 days. Unique users: 1

provide graphical views of package structure

readxl

43 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

classgraphslots

41 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

R.utils

40 runs overall, including 0 for the last 60 days. Unique users: 5

Various Programming Utilities

deldir

39 runs overall, including 0 for the last 60 days. Unique users: 1

Delaunay Triangulation and Dirichlet

htmlTable

39 runs overall, including 0 for the last 60 days. Unique users: 3

unknown

LearnBayes

39 runs overall, including 0 for the last 60 days. Unique users: 1

Functions for Learning Bayesian Inference

spdep

39 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 34

Spatial Dependence: Weighting Schemes

gisfin

39 runs overall, including 0 for the last 60 days. Unique users: 1

Finland GIS R Tools

ncdf

36 runs overall, including 0 for the last 60 days. Unique users: 2

Interface to Unidata netCDF data files

posterOmicsErrorVisualization

36 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

readr

36 runs overall, including 0 for the last 60 days. Unique users: 3

Read Tabular Data

pxweb

35 runs overall, including 0 for the last 60 days. Unique users: 1

R Interface to the PX-Web/PC-Axis API

misc3d

35 runs overall, including 0 for the last 60 days. Unique users: 3 Publications: 16

Miscellaneous 3D Plots

cubature

34 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

rootSolve

33 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

np

33 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 157

unknown

rivr

33 runs overall, including 0 for the last 60 days. Unique users: 1

River Research and Modelling

abind

31 runs overall, including 0 for the last 60 days. Unique users: 3

Combine Multidimensional Arrays

SDMTools

31 runs overall, including 0 for the last 60 days. Unique users: 3

Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises

multicool

31 runs overall, including 0 for the last 60 days. Unique users: 2

Permutations of Multisets in Cool-Lex Order

ks

31 runs overall, including 0 for the last 60 days. Unique users: 2

Kernel Smoothing

biomaRt

30 runs overall, including 0 for the last 60 days. Unique users: 3 Publications: 440

Interface to BioMart databases

corrplot

30 runs overall, including 0 for the last 60 days. Unique users: 2

Visualization of a correlation matrix

covr

29 runs overall, including 0 for the last 60 days. Unique users: 1

Test Coverage for Packages

pblack.networkFeasibleSolutions

28 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

rcom

27 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

qvalue

27 runs overall, including 0 for the last 60 days. Unique users: 2

Q-value estimation for false discovery rate control

edgeR

27 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 2935

Empirical Analysis of Digital Gene Expression Data in R

rscproxy

27 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

categoryCompare

26 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 4

Meta-analysis of high-throughput experiments using feature annotations

geojsonio

25 runs overall, including 0 for the last 60 days. Unique users: 1

Convert Data from and to 'geoJSON' or 'topoJSON'

mclust

25 runs overall, including 0 for the last 60 days. Unique users: 2

Normal Mixture Modeling for Model-Based Clustering

REmap

24 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

ffbase

23 runs overall, including 0 for the last 60 days. Unique users: 2

Basic Statistical Functions for Package 'ff'

rtimes

23 runs overall, including 0 for the last 60 days. Unique users: 1

Client for New York Times 'APIs'

cleanup

23 runs overall, including 0 for the last 60 days. Unique users: 7

Files for [clean]ing data from [Up]psala

fastmatch

23 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

wellknown

23 runs overall, including 0 for the last 60 days. Unique users: 1

Convert between WKT to GeoJSON

ggdendro

22 runs overall, including 0 for the last 60 days. Unique users: 1

Tools for extracting dendrogram and tree diagram plot data for use with ggplot2

fennica

22 runs overall, including 0 for the last 60 days. Unique users: 1

Finnish National Bibliography Fennica Toolkit

ckanr

22 runs overall, including 0 for the last 60 days. Unique users: 1

Client for the Comprehensive Knowledge Archive Network

StanHeaders

22 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

svd

22 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

mosaicData

21 runs overall, including 0 for the last 60 days. Unique users: 1

Project MOSAIC Data Sets

httsnap

21 runs overall, including 0 for the last 60 days. Unique users: 1

High Level 'HTTP' Client

mosaic

21 runs overall, including 0 for the last 60 days. Unique users: 1

Project MOSAIC

bibtex

21 runs overall, including 0 for the last 60 days. Unique users: 3

unknown

rinat

21 runs overall, including 0 for the last 60 days. Unique users: 1

Access iNaturalist data through APIs

rif

20 runs overall, including 0 for the last 60 days. Unique users: 1

Client for 'Neuroscience' Information Framework 'APIs'

sm

20 runs overall, including 0 for the last 60 days. Unique users: 2

Smoothing methods for nonparametric regression and density estimation

elastic

20 runs overall, including 0 for the last 60 days. Unique users: 1

General Purpose Interface to 'Elasticsearch'

lawn

20 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

vioplot

20 runs overall, including 0 for the last 60 days. Unique users: 2

Violin plot

ore

19 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

netresponse

19 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 5

Functional Network Analysis

oai

19 runs overall, including 0 for the last 60 days. Unique users: 1

General Purpose 'Oai-PMH' Services Client

TestS4SlotsAndClasses

19 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

minet

19 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

black.miRNAmRNA.NSCLC.networkEnrichment

19 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

dmt

19 runs overall, including 0 for the last 60 days. Unique users: 1

Dependency Modeling Toolkit

infotheo

19 runs overall, including 0 for the last 60 days. Unique users: 1

Information-Theoretic Measures

numDeriv

19 runs overall, including 0 for the last 60 days. Unique users: 4

Accurate Numerical Derivatives

MAd

18 runs overall, including 0 for the last 60 days. Unique users: 1

Meta-Analysis with Mean Differences

breastcancerReproducibility

18 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

compute.es

17 runs overall, including 1 for the last 60 days. Unique users: 1

unknown

fortunes

17 runs overall, including 0 for the last 60 days. Unique users: 2

R Fortunes

heatmap.plus

17 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

GenomicAlignments

16 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 144

Representation and manipulation of short genomic alignments

cowsay

16 runs overall, including 0 for the last 60 days. Unique users: 1

Messages

Rsamtools

16 runs overall, including 0 for the last 60 days. Unique users: 1

Binary alignment

metafor

15 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 1063

Meta-Analysis Package for R

genlasso

15 runs overall, including 0 for the last 60 days. Unique users: 1

Path algorithm for generalized lasso problems

rerddap

15 runs overall, including 0 for the last 60 days. Unique users: 1

General Purpose Client for 'ERDDAP' Servers

GGally

15 runs overall, including 0 for the last 60 days. Unique users: 2

Extension to 'ggplot2'

rtracklayer

15 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 51

R interface to genome browsers and their annotation tracks

mnormt

15 runs overall, including 0 for the last 60 days. Unique users: 8

unknown

ggvis

14 runs overall, including 0 for the last 60 days. Unique users: 1

Interactive Grammar of Graphics

VennDiagram

14 runs overall, including 0 for the last 60 days. Unique users: 2

Generate High-Resolution Venn and Euler Plots

ncdf4

14 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to Unidata netCDF

BSgenome

14 runs overall, including 0 for the last 60 days. Unique users: 1

Infrastructure for Biostrings-based genome data packages

RItools

14 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 86

Randomization Inference Tools

pBlackNetworkAnalysis

13 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

solr

13 runs overall, including 0 for the last 60 days. Unique users: 1

General Purpose R Interface to Solr

purrr

12 runs overall, including 0 for the last 60 days. Unique users: 1

Functional Programming Tools

pracma

12 runs overall, including 0 for the last 60 days. Unique users: 2

Practical Numerical Math Functions

ALL

12 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

sbc.breastCancerExosome

12 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

statmod

12 runs overall, including 0 for the last 60 days. Unique users: 2

Statistical Modeling

RefManageR

12 runs overall, including 0 for the last 60 days. Unique users: 2

Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management

knitcitations

12 runs overall, including 0 for the last 60 days. Unique users: 2

Citations for Knitr Markdown Files

BSgenome.Hsapiens.UCSC.hg19

12 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

sandwich

12 runs overall, including 0 for the last 60 days. Unique users: 4 Publications: 112

Robust Covariance Matrix Estimators

pxR

11 runs overall, including 0 for the last 60 days. Unique users: 1

PC-Axis with R

fmcorrelationbreastcaparp1

11 runs overall, including 0 for the last 60 days. Unique users: 1

Functions for calculating the correlations in PARP1 nucleosome data in breast cancer cell lines

classGraph

11 runs overall, including 0 for the last 60 days. Unique users: 1

Construct Graphs of S4 Class Hierarchies

statfi

11 runs overall, including 0 for the last 60 days. Unique users: 1

statfi R tools

tweetJobStatus

11 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

XLConnectJars

11 runs overall, including 0 for the last 60 days. Unique users: 2

JAR Dependencies for the XLConnect Package

XLConnect

11 runs overall, including 0 for the last 60 days. Unique users: 2

Excel Connector for R

DiagrammeR

11 runs overall, including 0 for the last 60 days. Unique users: 3

Create Graph Diagrams and Flowcharts Using R

psych

10 runs overall, including 0 for the last 60 days. Unique users: 7

Procedures for Psychological

hash

9 runs overall, including 0 for the last 60 days. Unique users: 2

Full feature implementation of hash/associated arrays/dictionaries

servr

9 runs overall, including 0 for the last 60 days. Unique users: 1

A Simple HTTP Server to Serve Static Files or Dynamic Documents

analogsea

9 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to 'Digital Ocean'

oro.nifti

9 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

lungcancer.matchedTissue

9 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

GOSemSim

8 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 286

GO-terms Semantic Similarity Measures

openadds

8 runs overall, including 0 for the last 60 days. Unique users: 1

Client to Access 'Openaddresses.io' Data

sna

8 runs overall, including 0 for the last 60 days. Unique users: 2

Tools for Social Network Analysis

fmdatabreastcaparp1

8 runs overall, including 0 for the last 60 days. Unique users: 1

Fondufe-Mittendorfe lab data for PARP1 correlation in MCF-7 and MDA-MB231

rotl

8 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to the 'Open Tree of Life' API

genderdata

8 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

rncl

8 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

assertive

8 runs overall, including 0 for the last 60 days. Unique users: 1

Readable Check Functions to Ensure Code Integrity

samatha

7 runs overall, including 0 for the last 60 days. Unique users: 1

Samatha-package.R

printr

7 runs overall, including 0 for the last 60 days. Unique users: 1

Automatically Print R Objects According to knitr Output Format

DOSE

7 runs overall, including 0 for the last 60 days. Unique users: 1

Disease Ontology Semantic and Enrichment analysis

corrgram

7 runs overall, including 0 for the last 60 days. Unique users: 2

Plot a Correlogram

raster

7 runs overall, including 0 for the last 60 days. Unique users: 3

Geographic Data Analysis and Modeling

deSolve

7 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 186

unknown

DO.db

7 runs overall, including 0 for the last 60 days. Unique users: 1

A set of annotation maps describing the entire Disease Ontology

rdatacite

7 runs overall, including 0 for the last 60 days. Unique users: 1

'DataCite' Client for 'OAI-PMH' Methods and their Search 'API'

RCy3

7 runs overall, including 0 for the last 60 days. Unique users: 1

Display and manipulate graphs in Cytoscape >= 3.1

classifierPowerAnalysis.tcga

7 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

DO.db

7 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

expm

7 runs overall, including 0 for the last 60 days. Unique users: 2

Matrix exponential

atom2seq

7 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

bcrypt

7 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

sangerseqR

7 runs overall, including 0 for the last 60 days. Unique users: 1

Tools for Sanger Sequencing Data in R

partitions

6 runs overall, including 0 for the last 60 days. Unique users: 1

Additive Partitions of Integers

polynom

6 runs overall, including 0 for the last 60 days. Unique users: 1

A collection of functions to implement a class for univariate polynomial manipulations

huge

6 runs overall, including 0 for the last 60 days. Unique users: 2

High-dimensional Undirected Graph Estimation

lineprof

6 runs overall, including 0 for the last 60 days. Unique users: 1

An alternative display for line profiling information

geiger

6 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 327

Analysis of evolutionary diversification

untb

6 runs overall, including 0 for the last 60 days. Unique users: 1

ecological drift under the UNTB

doBy

6 runs overall, including 0 for the last 60 days. Unique users: 2

Groupwise Statistics

strucchange

6 runs overall, including 0 for the last 60 days. Unique users: 2

Testing

rcrossref

6 runs overall, including 0 for the last 60 days. Unique users: 1

Client for Various 'CrossRef' 'APIs'

RGtk2

6 runs overall, including 0 for the last 60 days. Unique users: 2

R bindings for Gtk 2.8.0 and above

BRugs

6 runs overall, including 5 for the last 60 days. Unique users: 2

Interface to the 'OpenBUGS' MCMC Software

gmp

6 runs overall, including 0 for the last 60 days. Unique users: 1

Multiple Precision Arithmetic

Brobdingnag

6 runs overall, including 0 for the last 60 days. Unique users: 1

Very large numbers in R

CESB.lungcancerP01.analysis

6 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

Ckmeans.1d.dp

6 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

subplex

6 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

clusteredfusedlasso

6 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

forestplot

6 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

hexbin

6 runs overall, including 2 for the last 60 days. Unique users: 4

Hexagonal Binning Routines

Ckmeans.1d.dp

6 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 29

unknown

STRINGdb

5 runs overall, including 0 for the last 60 days. Unique users: 1

STRINGdb

evd

5 runs overall, including 0 for the last 60 days. Unique users: 1

Functions for Extreme Value Distributions

nycflights13

5 runs overall, including 0 for the last 60 days. Unique users: 2

Flights that Departed NYC in 2013

GenomicFiles

5 runs overall, including 0 for the last 60 days. Unique users: 1

Distributed computing by file or by range

XMLSchema

5 runs overall, including 0 for the last 60 days. Unique users: 1

R facilities to read XML schema

Reol

5 runs overall, including 0 for the last 60 days. Unique users: 1

R interface to the Encyclopedia of Life

memisc

5 runs overall, including 0 for the last 60 days. Unique users: 2

Tools for Management of Survey Data

prodlim

5 runs overall, including 0 for the last 60 days. Unique users: 1

Product-Limit Estimation for Censored Event History Analysis

RecordLinkage

5 runs overall, including 0 for the last 60 days. Unique users: 1

Record Linkage in R

mzR

5 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 1453

mzR - To compute estimates and their errors for Austrian microcensus data

ada

5 runs overall, including 0 for the last 60 days. Unique users: 1

The R Package Ada for Stochastic Boosting

ipred

5 runs overall, including 0 for the last 60 days. Unique users: 1

Improved Predictors

xcms

5 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 1462

LC/MS and GC/MS Data Analysis

KEGGgraph

5 runs overall, including 0 for the last 60 days. Unique users: 1

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

svDialogs

5 runs overall, including 0 for the last 60 days. Unique users: 1

SciViews GUI API - Dialog boxes

lava

5 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 8

Latent Variable Models

tnet

5 runs overall, including 0 for the last 60 days. Unique users: 1

Software for Analysis of Weighted

Gmisc

4 runs overall, including 0 for the last 60 days. Unique users: 2

Descriptive Statistics

eurostat

4 runs overall, including 0 for the last 60 days. Unique users: 1

Tools for Eurostat Open Data

EBImage

4 runs overall, including 0 for the last 60 days. Unique users: 2 Publications: 75

DUMMY DUMMY DUMMY

KEGGREST

4 runs overall, including 0 for the last 60 days. Unique users: 1

Client-side REST access to KEGG

clusterGeneration

4 runs overall, including 0 for the last 60 days. Unique users: 2

Random Cluster Generation

gWidgetsRGtk2

4 runs overall, including 0 for the last 60 days. Unique users: 1

Toolkit implementation of gWidgets for RGtk2

fftwtools

4 runs overall, including 0 for the last 60 days. Unique users: 2

Wrapper for FFTW3: Includes 1-D

gWidgets

4 runs overall, including 0 for the last 60 days. Unique users: 1

gWidgets API for building toolkit-independent

cairoDevice

4 runs overall, including 0 for the last 60 days. Unique users: 1

Cairo-based cross-platform antialiased graphics device driver.

RWeka

4 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 65

R/Weka Interface

modeltools

4 runs overall, including 0 for the last 60 days. Unique users: 2

Tools and Classes for Statistical Models

signal

4 runs overall, including 0 for the last 60 days. Unique users: 1

Signal Processing

timeDate

4 runs overall, including 0 for the last 60 days. Unique users: 1

Rmetrics - Chronological and Calendar Objects

pls

4 runs overall, including 0 for the last 60 days. Unique users: 1

Partial Least Squares and Principal Component Regression

rplos

4 runs overall, including 0 for the last 60 days. Unique users: 1

Interface to PLoS Journals Search API

SRAdb

4 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 9

A compilation of metadata from NCBI SRA and tools

hgu95av2cdf

4 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

KEGG.db

4 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

tuneR

4 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

tiff

4 runs overall, including 0 for the last 60 days. Unique users: 2

unknown

TestS4SlotsOnly

4 runs overall, including 0 for the last 60 days. Unique users: 1

unknown

RWekajars

4 runs overall, including 0 for the last 60 days. Unique users: 1

R/Weka interface jars

cvxclustr

4 runs overall, including 0 for the last 60 days. Unique users: 1

Splitting methods for convex clustering

RWordPress

4 runs overall, including 0 for the last 60 days. Unique users: 3

unknown

GEOquery

4 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 153

Get data from NCBI Gene Expression Omnibus

scholar

3 runs overall, including 0 for the last 60 days. Unique users: 1

Analyse citation data from Google Scholar

topGO

3 runs overall, including 0 for the last 60 days. Unique users: 1

Enrichment Analysis for Gene Ontology

networkTools

3 runs overall, including 0 for the last 60 days. Unique users: 1

Tools for analysing and visualising large networks.

svGUI

3 runs overall, including 0 for the last 60 days. Unique users: 1

SciViews GUI API - Functions to manage GUIs

msm

3 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 158

Multi-State Markov and Hidden Markov Models in Continuous Time

partykit

3 runs overall, including 0 for the last 60 days. Unique users: 1

A Toolkit for Recursive Partytioning

RNeXML

3 runs overall, including 0 for the last 60 days. Unique users: 1

Semantically Rich I/O for the 'NeXML' Format

spoccutils

3 runs overall, including 0 for the last 60 days. Unique users: 1

Utilities for Use with 'spocc'

rattle

3 runs overall, including 0 for the last 60 days. Unique users: 1

Graphical User Interface for Data Mining in R

graphite

3 runs overall, including 0 for the last 60 days. Unique users: 1

GRAPH Interaction from pathway Topological Environment

sem

3 runs overall, including 0 for the last 60 days. Unique users: 3

Structural Equation Models

enigma

3 runs overall, including 0 for the last 60 days. Unique users: 1

R Client for the Enigma API

AER

3 runs overall, including 0 for the last 60 days. Unique users: 2

Applied Econometrics with R

urca

3 runs overall, including 0 for the last 60 days. Unique users: 1

Unit root and cointegration tests for time series data

phytools

3 runs overall, including 0 for the last 60 days. Unique users: 1 Publications: 552

Phylogenetic Tools for Comparative Biology

MultinomialCI

3 runs overall, including 0 for the last 60 days. Unique users: 1

Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz

R.cache

3 runs overall, including 0 for the last 60 days.