Applications > python

Publications

Users of this package associated the following 71 publications with the XSEDE allocation/account under which they were running this software. Thus the publications may have come before or after the runs of this software, but the authors considered them to be related to the same line of research.

  • Sakunchai Khumsubdee, Yubo Fan (University of Houston-Downtown), Kevin Burgess, (September2013) "A Comparison between Oxazoline-imidazolinylidene, -imidazolylidine, -benzimidazolylidene Hydrogenation Catalysts", The Journal of Organic Chemistry 78 / 19, 9969-9974. http://dx.doi.org/10.1021/jo4013783
  • Yuzhuo Chu, Jianzhuang Yao, Hong Guo (University of Tennessee, Knoxville), (2012) "QM/MM MD and Free Energy Simulations of G9a-Like Protein (GLP) and Its Mutants: Understanding the Factors that Determine the Product Specificity", PLoS ONE 7 / 5, e37674. http://dx.doi.org/10.1371/journal.pone.0037674
  • David Wright (University College, London), S. Kashif Sadiq, Gianni De Fabritiis, Peter V. Coveney, (July2012) "Thumbs Down for HIV: Domain Level Rearrangements Do Occur in the NNRTI-Bound HIV-1 Reverse Transcriptase", Journal of the American Chemical Society 134 / 31, 12885-12888. http://dx.doi.org/10.1021/ja301565k
  • Jianzhuang Yao, Alexander Wlodawer, Hong Guo (University of Tennessee, Knoxville), (2013) "Understanding the Autocatalytic Process of Pro-kumamolisin Activation from Molecular Dynamics and Quantum Mechanical/Molecular Mechanical (QM/MM) Free-Energy Simulations", Chemistry - A European Journal undefined / undefined, n/a-n/a. http://dx.doi.org/10.1002/chem.201301310
  • Peikai Chen, Yubo Fan (University of Houston-Downtown), Tsz-kwong Man, YS Hung, Ching C Lau, (November2013) "A gene signature based method for identifying subtypes and subtype-specific drivers in cancer with an application to medulloblastoma", BMC Bioinformatics 14 / Suppl 18, S1. http://dx.doi.org/10.1186/1471-2105-14-S18-S1
  • Chul-Ho Lee, Theanne Schiros, Elton Jose Dos Santos (Stanford University), Bumjung Kim, Kevin G. Yager, Seok Ju Kang, Sunwoo Lee, Jaeeun Yu, Kenji Watanabe, Takashi Taniguchi, James Hone, Efthimios Kaxiras, Colin Nuckolls, Philip Kim, (January2014) "Epitaxial Growth of Molecular Crystals on van der Waals Substrates for High-Performance Organic Electronics", Advanced Materials undefined / undefined, n/a-n/a. http://dx.doi.org/10.1002/adma.201304973
  • Yongen Yu (Illinois Institute of Technology), Zhiling Lan (Illinois Institute of Technology), Jingjin Wu (Illinois Institute of Technology), Nicholas Gnedin (University of Chicago), Andrey Kravtsov (University of Chicago), (May2013) "A Transparent Collective I/O Implementation", IPDPS Boston, MA , .
  • Benjamin A. Hall, David Wright (University College, London), Shantenu Jha, Peter V. Coveney, (August2012) "Quantized Water Access to the HIV-1 Protease Active Site as a Proposed Mechanism for Cooperative Mutations in Drug Affinity", Biochemistry 51 / 33, 6487-6489. http://dx.doi.org/10.1021/bi300432u
  • Elton Jose Dos Santos (Stanford University), Efthimios Kaxiras, (2013) "Electric-Field Dependence of the Effective Dielectric Constant in Graphene", Nano Letters 13 / 3, 898-902. http://dx.doi.org/10.1021/nl303611v
  • Wei Li Wang, Elton Santos (Stanford University), Bin Jiang, Ekin Cubuk, Colin Ophus, Alba Centeno, Amaia Pesquera, Amaia Zurutuza, Jim Ciston, Robert M Westervelt, Efthimios Kaxiras, (January2014) "Direct Observation of a long-lived single-atom catalyst chiseling atomic structures in graphene", Nano Letters undefined / undefined, 140121142046000. http://dx.doi.org/10.1021/nl403327u
  • Elton Jose Dos Santos (Stanford University), (2013) "Magnetoelectric effect in functionalized few-layer graphene", Physical Review B 87 / 15, . http://dx.doi.org/10.1103/PhysRevB.87.155440
  • Elton Jose Dos Santos (Stanford University), (2013) "Electrical Spin Switch in Hydrogenated Multilayer Graphene", The Journal of Physical Chemistry C 117 / 12, 6420-6425. http://dx.doi.org/10.1021/jp310463k
  • Elton Jose Dos Santos (Stanford University), (November2013) "Electrically Driven Tuning of the Dielectric Constant in MoS2Layers", ACS Nano 7 / 12, 10741-10746. http://dx.doi.org/10.1021/nn403738b
  • Elton Jose Dos Santos (Stanford University), (November2013) "Carrier-Mediated Magnetoelectric Coupling in Functionalized Graphene", ACS Nano 7 / 11, 9927-9932. http://dx.doi.org/10.1021/nn4037877
  • Noa Marom (University of Texas at Austin), Jonathan Moussa (University of Texas at Austin), Xinguo Ren, Alexandre Tkatchenko, James Chelikowsky (University of Texas at Austin), (December2011) "Electronic structure of dye-sensitized TiO_{2} clusters from many-body perturbation theory", Physical Review B 84 / 24, 245115. http://dx.doi.org/10.1103/PhysRevB.84.245115
  • Noa Marom (University of Texas at Austin), Xinguo Ren, Jonathan Moussa (University of Texas at Austin), James Chelikowsky (University of Texas at Austin), Leeor Kronik, (2011) "Electronic structure of copper phthalocyanine from G_{0}W_{0} calculations", Physical Review B 84 / 19, 195143. http://dx.doi.org/10.1103/PhysRevB.84.195143
  • Justin A Lemkul, Alexey Savelyev, Alexander D MacKerell, (June2014) "Induced Polarization Influences the Fundamental Forces in DNA Base Flipping", The Journal of Physical Chemistry Letters 5 / 12, 2077-2083. http://dx.doi.org/10.1021/jz5009517
  • Jianzhuang Yao, Yuzhuo Chu, Ran An, Hong Guo (University of Tennessee, Knoxville), (2012) "Understanding Product Specificity of Protein Lysine Methyltransferases from QM/MM Molecular Dynamics and Free Energy Simulations: The Effects of Mutation on SET7/9 beyond the Tyr/Phe Switch", Journal of Chemical Information and Modeling 52 / 2, 449-456. http://dx.doi.org/10.1021/ci200364m
  • Noa Marom (University of Texas at Austin), Minjung Kim (University of Texas at Austin), James Chelikowsky (University of Texas at Austin), (2012) "Structure Selection Based on High Vertical Electron Affinity for TiO_{2} Clusters", Physical Review Letters 108 / 10, 106801. http://dx.doi.org/10.1103/PhysRevLett.108.106801
  • Thomas Furlani (SUNY at Buffalo), Matthew D. Jones, Steve Gallo (SUNY at Buffalo), Andrew E. Bruno, Charng-Da Lu, Amin Ghadersohi, Ryan J. Gentner, Abani Patra, Robert L. DeLeon, Gregor von Laszewski, Fugang Wang, Ann Zimmerman, (2012) "Performance metrics and auditing framework using application kernels for high-performance computer systems", Concurrency and Computation: Practice and Experience 25 / 7, 918-931. http://dx.doi.org/10.1002/cpe.2871
  • James C. Browne, Thomas Furlani (SUNY at Buffalo), Robert T. McLay, Robert L. DeLeon, Charng-Da Lu, Matthew D. Jones, Steve Gallo (SUNY at Buffalo), Amin Ghadersohi, Abani K. Patra, William Barth (University of Texas at Austin), John Hammond, (November2013) "Enabling comprehensive data-driven system management for large computational facilities", Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis on - SC '13 Denver, CO, USA , 1-11. http://dx.doi.org/10.1145/2503210.2503230
  • Yoo-shin Kim, Feng Li, Ren Kong, Yang Bai, King Li, Yubo Fan (University of Houston-Downtown), Brian E. O’Neill, Zheng Li, (August2013) "Multivalency of non-peptide integrin αVβ3 antagonist slows tumor growth", Molecular Pharmaceutics undefined / undefined, 130820125717008. http://dx.doi.org/10.1021/mp400096z
  • Peikai Chen, Y. S. Hung, Tsz-Kwong Man, Ching C. Lau, Yubo Fan (University of Houston-Downtown), (2012) "A gene signature based method for identifying subtypes and subtype-specific drivers in cancer with an application to medulloblastoma", 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) Stan Fulton Building, UNLV, Las Vegas, Nevada , 1-6. http://dx.doi.org/10.1109/ICCABS.2012.6182629
  • Mauro Lapelosa, Emilio Gallicchio, Ronald Levy (Rutgers, the State University of New Jersey), (2012) "Conformational transitions and convergence of absolute binding free energy calculations.", Journal of Chemical Theory and Computation , .
  • Emilio Gallicchio, Ronald Levy (Rutgers, the State University of New Jersey), (2012) "Prediction of SAMPL3 host-guest affinities with the binding energy distribution analysis method (BEDAM).", Journal of Computer-Aided Molecular Design , .
  • Georgios A Tritsaris (Harvard University), Brad D Malone (Harvard University), Efthimios Kaxiras (Harvard University), (2013) "Optoelectronic Properties of Single-layer, Double-layer and Bulk Tin Sulfide: A Theoretical Study", Journal of Applied Physics , .
  • Luca Larini (University of California-Santa Barbara), Lanyuan Lu (University of Utah), Gregory Voth (University of Chicago), (April2010) "The multiscale coarse-graining method. VI. Implementation of three-body coarse-grained potentials", The Journal of Chemical Physics 132 / 16, 164107. http://dx.doi.org/10.1063/1.3394863
  • U. Hömmerich, A.G. Bluiett, Ivy Jones (Hampton University), S.B. Trivedi, R.T. Shah, (January2006) "Crystal growth and infrared spectroscopy of Cr:Cd1−xZnxTe and Cr:Cd1−xMgxTe", Journal of Crystal Growth 287 / 2, 243-247. http://dx.doi.org/10.1016/j.jcrysgro.2005.11.015
  • Ivy Jones (Hampton University), (May2008) "Effect of polyhedral-oligomeric-sil-sesquioxanes on thermal and mechanical behavior of SC-15 epoxy", eXPRESS Polymer Letters 2 / 7, 494-501. http://dx.doi.org/10.3144/expresspolymlett.2008.59
  • U. Hömmerich, Ivy Jones (Hampton University), Ei Ei Nyein, S.B. Trivedi, (January2006) "Comparison of the optical properties of diffusion-doped polycrystalline Cr:ZnSe and Cr:CdTe windows", Journal of Crystal Growth 287 / 2, 450-453. http://dx.doi.org/10.1016/j.jcrysgro.2005.11.064
  • U Hommerich, Ivy Jones (Hampton University), EiEi Nyein, S.B. Trivedi, (2005) "Chromium Diffusion Doping of Commercial ZnSe and CdTe Windows for Mid-Infrared Solid-State Laser Applications", 2005 MRS Spring Meeting San Francisco, California 864/Symposium E - Semiconductor Defect Engineering - Materials, Synthesis Structures and Devices, . http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=8009067
  • Georgios A. Tritsaris (Harvard University), Efthimios Kaxiras (Harvard University), Sheng Meng (Chinese Academy of Sciences), Enge Wang (Peking University), (April2013) "Adsorption and Diffusion of Lithium on Layered Silicon for Li-Ion Storage", Nano Letters , . http://dx.doi.org/10.1021/nl400830u
  • Jing Huang (University of Maryland, Baltimore), Alexander D. MacKerell, (2013) "CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data", Journal of Computational Chemistry 34 / 25, 2135-2145. http://dx.doi.org/10.1002/jcc.23354
  • Ruichang Xiong (University of Delaware), Stanley I. Sandler, Dionisios G. Vlachos, (2011) "Alcohol Adsorption onto Silicalite from Aqueous Solution", The Journal of Physical Chemistry C 115 / 38, 18659-18669. http://dx.doi.org/10.1021/jp205312k
  • Ruichang Xiong (University of Delaware), Stanley I. Sandler, Dionisios G. Vlachos, (2012) "Molecular Screening of Alcohol and Polyol Adsorption onto MFI-Type Zeolites", Langmuir 28 / 9, 4491-4499. http://dx.doi.org/10.1021/la204710j
  • Emilio Gallicchio (City University of New York), Nanjie Deng, Peng He, Lauren Wickstrom, Alexander L. Perryman, Daniel N. Santiago, Stefano Forli, Arthur J. Olson, Ronald M. Levy, (2014) "Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge", Journal of Computer-Aided Molecular Design undefined / undefined, . http://dx.doi.org/10.1007/s10822-014-9711-9
  • Britton Smith, Brian O'Shea (Michigan State University), G. Mark Voit, David Ventimiglia, Sam Skillman (Stanford University), (December2013) "COSMOLOGICAL SIMULATIONS OF ISOTROPIC CONDUCTION IN GALAXY CLUSTERS", The Astrophysical Journal 778 / 2, 152. http://dx.doi.org/10.1088/0004-637X/778/2/152
  • Ekin D. Cubuk, Wei L. Wang, Kejie Zhao (Massachusetts Institute of Technology), Joost J. Vlassak, Zhigang Suo, Efthimios Kaxiras, (March2013) "Morphological Evolution of Si Nanowires upon Lithiation: A First-Principles Multiscale Model", Nano Letters 13 / 5, 2011-2015. http://dx.doi.org/10.1021/nl400132q
  • Cameron Hummels (University of Arizona), Greg L. Bryan (Columbia University in the City of New York), Britton Smith (Michigan State University), Matthew Turk (Columbia University in the City of New York), (April2013) "Constraints on hydrodynamical subgrid models from quasar absorption line studies of the simulated circumgalactic medium", Monthly Notices of the Royal Astronomical Society 430 / 3, 1548-1565. http://dx.doi.org/10.1093/mnras/sts702
  • Daniel Barr (Utica College), Taiji Oashi (University of Maryland, Baltimore County), Kimberly Burkhard, Sarah Lucius, Ramin Samadani, Jun Zhang, Paul Shapiro, Alexander D. MacKerell, Jr. (University of Maryland, Baltimore County), Arjan van der Vaart (University of South Florida), (August2011) "Importance of Domain Closure for the Autoactivation of ERK2", Biochemistry 50 / 37, 8038-8048. http://dx.doi.org/10.1021/bi200503a
  • Suliman Salman (Utica College), Daniel Barr (Utica College), (August2012) "Peptides derived from the recognition helices of the gal and lac repressor proteins demonstrate sequence-specific DNA-binding", 244th ACS National Meeting Philadelphia, PA , .
  • Danielle McHarris (Utica College), Daniel Barr (Utica College), (August2012) "Sequence-Specific DNA-Binding Behavior of GCN4", 244th ACS National Meeting Philadelphia, PA , . http://abstracts.acs.org/chem/244nm/program/view.php?obj_id=152217&terms=
  • Georgios A Tritsaris (Harvard University), Kejie Zhao (Harvard University), Onyekwelu U Okeke (Harvard University), Efthimios Kaxiras (Harvard University), (September2012) "Diffusion of Lithium in Bulk Amorphous Silicon: A Theoretical Study", The Journal of Physical Chemistry C 116 / 42, 22212-22216. http://dx.doi.org/10.1021/jp307221q
  • Liang Gao, Ahmad A. Hammoudi, Fuhai Li, Michael J. Thrall, Philip T. Cagle, Yuanxin Chen, Jian Yang, Xiaofeng Xia, Yubo Fan (The Methodist Hospital System), Yehia Massoud, Zhiyong Wang, Stephen T. C. Wong, (June2012) "Differential diagnosis of lung carcinoma with three-dimensional quantitative molecular vibrational imaging", Journal of Biomedical Optics 17 / 6, 066017. http://dx.doi.org/10.1117/1.JBO.17.6.066017
  • Yongen Yu (Illinois Institute of Technology), Zhiling Lan (Illinois Institute of Technology), Douglas Rudd (University of Chicago), Nicholas Gnedin (University of Chicago), Andrey Kravtsov (University of Chicago), Jingjin Wu (Illinois Institute of Technology), (May2012) "Improving Parallel IO Performance of Cell-based AMR Applications", IPDPS Shanghai, China , .
  • M. Ryan Joung, Mary E. Putman, Greg L. Bryan (Columbia University in the City of New York), Ximena Fernández, J. E. G. Peek, (2012) "GAS ACCRETION IS DOMINATED BY WARM IONIZED GAS IN MILKY WAY MASS GALAXIES ATz∼ 0", The Astrophysical Journal 759 / 2, 137. http://dx.doi.org/10.1088/0004-637X/759/2/137
  • C. M. Simpson, Greg L. Bryan (Columbia University in the City of New York), K. V. Johnston, B. D. Smith, M.-M. Mac Low, S. Sharma, J. Tumlinson, (2013) "The effect of feedback and reionization on star formation in low-mass dwarf galaxy haloes", Monthly Notices of the Royal Astronomical Society 432 / 3, 1989-2011. http://dx.doi.org/10.1093/mnras/stt474
  • Yuan Li (Columbia University in the City of New York), Greg L. Bryan (Columbia University in the City of New York), (2012) "SIMULATING THE COOLING FLOW OF COOL-CORE CLUSTERS", The Astrophysical Journal 747 / 1, 26. http://dx.doi.org/10.1088/0004-637X/747/1/26
  • Greg Meece (Michigan State University), Britton Smith, Brian O'Shea (Michigan State University), (March2014) "FRAGMENTATION IN DUSTY LOW-METALLICITY STAR-FORMING HALOS", The Astrophysical Journal 783 / 2, 75. http://dx.doi.org/10.1088/0004-637X/783/2/75
  • D. Ofengeim, P. Shi, B. Miao, J. Fan, X. Xia, Yubo Fan (The Methodist Hospital System), M. M. Lipinski, T. Hashimoto, M. Polydoro, J. Yuan, S. T. C. Wong, A. Degterev, (March2012) "Identification of Small Molecule Inhibitors of Neurite Loss Induced by A  peptide using High Content Screening", Journal of Biological Chemistry 287 / 12, 8714-8723. http://dx.doi.org/10.1074/jbc.M111.290957
  • Qiang Shao (DDDC), Yubo Fan (The Methodist Hospital System), Lijiang Yang (Peking University), Yi Qin Gao (Peking University), (March2012) "From protein denaturant to protectant: Comparative molecular dynamics study of alcohol∕protein interactions", The Journal of Chemical Physics 136 / 11, 115101. http://dx.doi.org/10.1063/1.3692801
  • Qijun Hong (California Institute of Technology), Axel van de Walle, (September2012) "Direct first-principles chemical potential calculations of liquids", The Journal of Chemical Physics 137 / 9, 094114. http://dx.doi.org/10.1063/1.4749287
  • Lijiang Yang (Peking University), Yubo Fan (The Methodist Hospital System), Yi Qin Gao (Peking University), (November2011) "Differences of Cations and Anions: Their Hydration, Surface Adsorption, and Impact on Water Dynamics", The Journal of Physical Chemistry B 115 / 43, 12456-12465. http://dx.doi.org/10.1021/jp207652h
  • Brian Crosby (Michigan State University), Brian O'Shea (Michigan State University), Britton Smith (Michigan State University), Matthew Turk (Columbia University in the City of New York), Oliver Hahn, (2013) "POPULATION III STAR FORMATION IN LARGE COSMOLOGICAL VOLUMES. I. HALO TEMPORAL AND PHYSICAL ENVIRONMENT", The Astrophysical Journal 773 / 2, 108. http://dx.doi.org/10.1088/0004-637X/773/2/108
  • Georgios A Tritsaris (Harvard University), Brad D Malone (Harvard University), Efthimios Kaxiras (Harvard University), (June2014) "Structural stability and electronic properties of low-index surfaces of SnS", Journal of Applied Physics 115, 173702. http://dx.doi.org/10.1063/1.4874775
  • Greg L. Bryan, Michael L. Norman, Brian O'Shea (Michigan State University), Tom Abel, John H. Wise, Matthew J. Turk, Daniel R. Reynolds, David C. Collins, Peng Wang, Sam Skillman (Stanford University), Britton Smith, Robert P. Harkness, James Bordner, Ji-hoon Kim, Michael Kuhlen, Hao Xu, Nathan Goldbaum, Cameron Hummels, Alexei G. Kritsuk, Elizabeth Tasker, Stephen Skory, Christine M. Simpson, Oliver Hahn, Jeffrey S. Oishi, Geoffrey C. So, Fen Zhao, Renyue Cen, Yuan Li, (April2014) "ENZO: AN ADAPTIVE MESH REFINEMENT CODE FOR ASTROPHYSICS", The Astrophysical Journal Supplement Series 211 / 2, 19. http://dx.doi.org/10.1088/0067-0049/211/2/19
  • Qijun Hong (California Institute of Technology), Axel van de Walle (Brown University), (September2013) "Solid-liquid coexistence in small systems: A statistical method to calculate melting temperatures", The Journal of Chemical Physics 139 / 9, 094114. http://dx.doi.org/10.1063/1.4819792
  • Jianzhuang Yao, Qin Xu, Hong Guo (University of Tennessee, Knoxville), (2013) "QM/MM and free-energy simulations of deacylation reaction catalysed by sedolisin, a serine-carboxyl peptidase", Molecular Simulation 39 / 3, 206-213. http://dx.doi.org/10.1080/08927022.2012.714467
  • M. Ryan Joung, Greg L. Bryan (Columbia University in the City of New York), Mary E. Putman, (2012) "GAS CONDENSATION IN THE GALACTIC HALO", The Astrophysical Journal 745 / 2, 148. http://dx.doi.org/10.1088/0004-637X/745/2/148
  • Matthew J. Turk, Jeffrey S. Oishi, Tom Abel, Greg L. Bryan (Columbia University in the City of New York), (2012) "MAGNETIC FIELDS IN POPULATION III STAR FORMATION", The Astrophysical Journal 745 / 2, 154. http://dx.doi.org/10.1088/0004-637X/745/2/154
  • Stephanie Tonnesen, Greg L. Bryan (Columbia University in the City of New York), (2012) "Star formation in ram pressure stripped galactic tails", Monthly Notices of the Royal Astronomical Society 422 / 2, 1609-1624. http://dx.doi.org/10.1111/j.1365-2966.2012.20737.x
  • Lauren Wickstrom, Peng He, Emilio Gallicchio, Ronald Levy (Rutgers, the State University of New Jersey), (2013) "Large scale affinity calculations of cyclodextrin host-guest complexes: understanding the role of reorganization in the molecular recognition process.", Journal of Chemical Theory and Computation , .
  • Zhiqiang Tan, Emilio Gallicchio, Mauro Lapelosa, Ronald Levy (Rutgers, the State University of New Jersey), (2012) "Theory of binless multi-state free energy estimation with applications to protein-ligand binding.", The Journal of Chemical Physics , .
  • Nan-jie Deng, Wei Dai, Ronald Levy (Rutgers, the State University of New Jersey), (2013) "How kinetics within the unfolded state affects protein folding: an anaylsis based on Markov state models and an ultra-long MD trajectory.", Journal of Physical Chemistry B , .
  • S. Wan, David Wright (University College, London), P. V. Coveney, (August2012) "Mechanism of Drug Efficacy within the Epidermal Growth Factor Receptor Revealed by Microsecond Molecular Dynamics Simulation", Molecular Cancer Therapeutics undefined / undefined, . http://dx.doi.org/10.1158/1535-7163.MCT-12-0644-T
  • David Wright (University College, London), Benjamin A. Hall, Paul Kellam, Peter V. Coveney, (June2012) "Global Conformational Dynamics of HIV-1 Reverse Transcriptase Bound to Non-Nucleoside Inhibitors", Biology 1 / 2, 222-244. http://dx.doi.org/10.3390/biology1020222
  • Jiří Šponer, Arnošt Mládek, Naďa Špačková, Xiaohui Cang, Thomas Cheatham (University of Utah), Stefan Grimme, (2013) "Relative Stability of Different DNA Guanine Quadruplex Stem Topologies Derived Using Large-Scale Quantum-Chemical Computations", Journal of the American Chemical Society 135 / 26, 9785-9796. http://dx.doi.org/10.1021/ja402525c
  • Zhiling Lan (Illinois Institute of Technology), Jingjin Wu (Illinois Institute of Technology), (November2012) "Hierarchical Task Mapping of Cell-based AMR Cosmology Simulations", SC Salt Lake, UT , .
  • Waldemar Debinski, Jian Yang, Jing Fan, Ying Li, Fuhai Li, Peikai Chen, Yubo Fan (University of Houston-Downtown), Xiaofeng Xia, (April2013) "Genome-Wide RNAi Screening Identifies Genes Inhibiting the Migration of Glioblastoma Cells", PLoS ONE 8 / 4, e61915. http://dx.doi.org/10.1371/journal.pone.0061915
  • Jonathan Moussa (University of Texas at Austin), Noa Marom (University of Texas at Austin), Na Sai (University of Texas at Austin), James Chelikowsky (University of Texas at Austin), (2012) "Theoretical Design of a Shallow Donor in Diamond by Lithium-Nitrogen Codoping", Physical Review Letters 108 / 22, . http://dx.doi.org/10.1103/PhysRevLett.108.226404
  • Thomas Körzdörfer, Noa Marom (University of Texas at Austin), (2012) "Strategy for finding a reliable starting point for G_{0}W_{0} demonstrated for molecules", Physical Review B 86 / 4, . http://dx.doi.org/10.1103/PhysRevB.86.041110