Applications > test

Publications

Users of this package associated the following 55 publications with the XSEDE allocation/account under which they were running this software. Thus the publications may have come before or after the runs of this software, but the authors considered them to be related to the same line of research.

  • U. Hömmerich, A.G. Bluiett, Ivy Jones (Hampton University), S.B. Trivedi, R.T. Shah, (January2006) "Crystal growth and infrared spectroscopy of Cr:Cd1−xZnxTe and Cr:Cd1−xMgxTe", Journal of Crystal Growth 287 / 2, 243-247. http://dx.doi.org/10.1016/j.jcrysgro.2005.11.015
  • Yosuke Mizuno (National Tsing Hua University), Yuri Lyubarsky, Ken-Ichi Nishikawa (University of Alabama, Huntsville), Philip E. Hardee, (August2012) "THREE-DIMENSIONAL RELATIVISTIC MAGNETOHYDRODYNAMIC SIMULATIONS OF CURRENT-DRIVEN INSTABILITY. III. ROTATING RELATIVISTIC JETS", The Astrophysical Journal 757 / 1, 16. http://dx.doi.org/10.1088/0004-637X/757/1/16
  • Ivy Jones (Hampton University), (May2008) "Effect of polyhedral-oligomeric-sil-sesquioxanes on thermal and mechanical behavior of SC-15 epoxy", eXPRESS Polymer Letters 2 / 7, 494-501. http://dx.doi.org/10.3144/expresspolymlett.2008.59
  • U. Hömmerich, Ivy Jones (Hampton University), Ei Ei Nyein, S.B. Trivedi, (January2006) "Comparison of the optical properties of diffusion-doped polycrystalline Cr:ZnSe and Cr:CdTe windows", Journal of Crystal Growth 287 / 2, 450-453. http://dx.doi.org/10.1016/j.jcrysgro.2005.11.064
  • U Hommerich, Ivy Jones (Hampton University), EiEi Nyein, S.B. Trivedi, (2005) "Chromium Diffusion Doping of Commercial ZnSe and CdTe Windows for Mid-Infrared Solid-State Laser Applications", 2005 MRS Spring Meeting San Francisco, California 864/Symposium E - Semiconductor Defect Engineering - Materials, Synthesis Structures and Devices, . http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=8009067
  • Jacobo Bielak (Carnegie Mellon University), Haydar Karaoglu (Carnegie Mellon University), Ricardo Taborda (University of Memphis), (2011) "Memory-efficient displacement-based internal friction for wave propagation simulation", GEOPHYSICS 76 / 6, T131-T145. http://dx.doi.org/10.1190/geo2011-0019.1
  • Yigit Isbiliroglu (Carnegie Mellon University), Ricardo Taborda (University of Memphis), Jacobo Bielak (Carnegie Mellon University), (2013) "Coupled Soil-Structure Interaction Effects of Building Clusters During Earthquakes", Earthquake Spectra undefined / undefined, 131030142624007. http://dx.doi.org/10.1193/102412EQS315M
  • Fangzhou Wei (University of Texas at Austin), Ali Yilmaz (University of Texas at Austin), (July2012) "Parallel truncated multigrid preconditioning of AIM for biolectromagnetics", USNC/URSI Radio Science Meeting Chicago, IL , .
  • Emilio Gallicchio (City University of New York), Nanjie Deng, Peng He, Lauren Wickstrom, Alexander L. Perryman, Daniel N. Santiago, Stefano Forli, Arthur J. Olson, Ronald M. Levy, (2014) "Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge", Journal of Computer-Aided Molecular Design undefined / undefined, . http://dx.doi.org/10.1007/s10822-014-9711-9
  • Yongen Yu (Illinois Institute of Technology), Zhiling Lan (Illinois Institute of Technology), Jingjin Wu (Illinois Institute of Technology), Nicholas Gnedin (University of Chicago), Andrey Kravtsov (University of Chicago), (May2013) "A Transparent Collective I/O Implementation", IPDPS Boston, MA , .
  • Nicholas Malaya, Karl Schulz (University of Texas at Austin), (April2012) "Early Experiences Porting Scientific Applications to the Many Integrated Core (MIC) Platform", TACC-Intel Highly-Parallel Computing Symposium TACC, Austin, TX , .
  • Todd A. Oliver, Nicholas Malaya, Rhys Ulerich, Robert D. Moser, (2014) "Estimating uncertainties in statistics computed from direct numerical simulation", Physics of Fluids 26 / 3, 035101. http://dx.doi.org/10.1063/1.4866813
  • Yongen Yu (Illinois Institute of Technology), Zhiling Lan (Illinois Institute of Technology), Douglas Rudd (University of Chicago), Nicholas Gnedin (University of Chicago), Andrey Kravtsov (University of Chicago), Jingjin Wu (Illinois Institute of Technology), (May2012) "Improving Parallel IO Performance of Cell-based AMR Applications", IPDPS Shanghai, China , .
  • Olga Wodo (Iowa State University), Baskar Ganapathysubramanian (Iowa State University), (2012) "Modeling morphology evolution during solvent-based fabrication of organic solar cells", Computational Materials Science 55 / undefined, 113-126. http://dx.doi.org/10.1016/j.commatsci.2011.12.012
  • Scott Callaghan (University of Southern California), Philip Maechling (University of Southern California), Patrick Small (University of Southern California), Kevin Milner (University of Southern California), Gideon Juve (University of Southern California), Thomas Jordan (University of Southern California), Ewa Deelman (University of Southern California), Gaurang Mehta (University of Southern California), Karan Vahi (University of Southern California), D. Gunter, K. Beattie, C. Brooks, (August2011) "Metrics for heterogeneous scientific workflows: A case study of an earthquake science application", International Journal of High Performance Computing Applications 25 / 3, 274-285. http://dx.doi.org/10.1177/1094342011414743
  • Scott Callaghan (University of Southern California), Ewa Deelman (University of Southern California), Dan Gunter, Gideon Juve (University of Southern California), Philip Maechling (University of Southern California), Christopher Brooks, Karan Vahi (University of Southern California), Kevin Milner (University of Southern California), Robert Gall (National Oceanic and Atmospheric Administration), Edward Field, David Okaya (University of Southern California), Thomas Jordan (University of Southern California), (September2010) "Scaling up workflow-based applications", Journal of Computer and System Sciences 76 / 6, 428-446. http://dx.doi.org/10.1016/j.jcss.2009.11.005
  • Robert Graves (US Geological Survey), Thomas Jordan (University of Southern California), Scott Callaghan (University of Southern California), Ewa Deelman (University of Southern California), Edward Field, Gideon Juve (University of Southern California), Carl Kesselman, Philip Maechling (University of Southern California), Gaurang Mehta (University of Southern California), Kevin Milner (University of Southern California), David Okaya (University of Southern California), Patrick Small (University of Southern California), Karan Vahi (University of Southern California), (March2011) "CyberShake: A Physics-Based Seismic Hazard Model for Southern California", Pure and Applied Geophysics 168 / 3-4, 367-381. http://dx.doi.org/10.1007/s00024-010-0161-6
  • Mats Rynge (University of Southern California), Scott Callaghan (University of Southern California), Ewa Deelman (University of Southern California), Gideon Juve (University of Southern California), Gaurang Mehta (University of Southern California), Karan Vahi (University of Southern California), Philip Maechling (University of Southern California), (July2012) "Enabling large-scale scientific workflows on petascale resources using MPI master/worker", Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment on Bridging from the eXtreme to the campus and beyond - XSEDE '12 Chicago, Illinois , 1. http://dx.doi.org/10.1145/2335755.2335846
  • Yifeng Cui (University of California-San Diego), Kim Olsen (San Diego State University), Thomas Jordan (University of Southern California), Kwangyoon Lee (San Diego Supercomputer Center), Jun Zhou (University of California-San Diego), Patrick Small (University of Southern California), Daniel Roten (ETH Zurich), Geoffrey Ely (Argonne National Laboratory), Dhabaleswar Panda (Ohio State University), Amit Chourasia (University of California-San Diego), John Levesque, Steven Day (San Diego State University), Philip Maechling (University of Southern California), (November2010) "Scalable Earthquake Simulation on Petascale Supercomputers", 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis New Orleans, Louisiana , 1-20. http://dx.doi.org/10.1109/SC.2010.45
  • Kim Olsen (San Diego State University), Steven Day (San Diego State University), Jean-Bernard Minster (Scripps Institution of Oceanography), Yifeng Cui (University of California-San Diego), Amit Chourasia (University of California-San Diego), David Okaya (University of Southern California), Philip Maechling (University of Southern California), Thomas Jordan (University of Southern California), (June2008) "TeraShake2: Spontaneous Rupture Simulations of Mw 7.7 Earthquakes on the Southern San Andreas Fault", Bulletin of the Seismological Society of America 98 / 3, 1162-1185. http://dx.doi.org/10.1785/0120070148
  • J. Douglas Zechar, Danijel Schorlemmer, Maria Liukis, John Yu, Fabian Euchner, Philip Maechling (University of Southern California), Thomas Jordan (University of Southern California), (August2010) "The Collaboratory for the Study of Earthquake Predictability perspective on computational earthquake science", Concurrency and Computation: Practice and Experience 22 / 12, 1836-1847. http://dx.doi.org/10.1002/cpe.1519
  • Kim Olsen (San Diego State University), Steven Day (San Diego State University), Luis Dalguer (ETH Zurich), John Mayhew (San Diego State University), Yifeng Cui (University of California-San Diego), Jun Zhou (University of California-San Diego), Victor Cruz-Atienza (Universidad Nacional Autonoma de Mexico), Daniel Roten (ETH Zurich), Philip Maechling (University of Southern California), Thomas Jordan (University of Southern California), David Okaya (University of Southern California), Amit Chourasia (University of California-San Diego), (February2009) "ShakeOut-D: Ground motion estimates using an ensemble of large earthquakes on the southern San Andreas fault with spontaneous rupture propagation", Geophysical Research Letters 36 / 4, . http://dx.doi.org/10.1029/2008GL036832
  • Yosuke Mizuno (National Tsing Hua University), Philip E. Hardee, Ken-Ichi Nishikawa, (March2014) "SPATIAL GROWTH OF THE CURRENT-DRIVEN INSTABILITY IN RELATIVISTIC JETS", The Astrophysical Journal 784 / 2, 167. http://dx.doi.org/10.1088/0004-637X/784/2/167
  • Ken-Ichi Nishikawa, Jacek Niemiec (Polish Academy of Sciences), P. E. Hardee, M. Medvedev, H. Sol, Yosuke Mizuno (National Tsing Hua University), B. Zhang, M. Pohl, M. Oka, D. H. Hartmann, (May2009) "WEIBEL INSTABILITY AND ASSOCIATED STRONG FIELDS IN A FULLY THREE-DIMENSIONAL SIMULATION OF A RELATIVISTIC SHOCK", The Astrophysical Journal 698 / 1, L10-L13. http://dx.doi.org/10.1088/0004-637X/698/1/L10
  • Xiaoming Hu, Petra M. Klein, Ming Xue, Alan Shapiro, Anita Nallapareddy, (2013) "Enhanced vertical mixing associated with a nocturnal cold front passage and its impact on near-surface temperature and ozone concentration", Journal of Geophysical Research: Atmospheres 118 / 7, 2714-2728. http://dx.doi.org/10.1002/jgrd.50309
  • Xiao-Ming Hu, Petra M. Klein, Ming Xue, Julie K. Lundquist, Fuqing Zhang, Youcun Qi, (2013) "Impact of Low-Level Jets on the Nocturnal Urban Heat Island Intensity in Oklahoma City", Journal of Applied Meteorology and Climatology 52 / 8, 1779-1802. http://dx.doi.org/10.1175/JAMC-D-12-0256.1
  • Xiaoming Hu, Petra M. Klein, Ming Xue, (2013) "Evaluation of the updated YSU planetary boundary layer scheme within WRF for wind resource and air quality assessments", Journal of Geophysical Research: Atmospheres 118 / 18, 10,490-10,505. http://dx.doi.org/10.1002/jgrd.50823
  • Petra M. Klein, Xiaoming Hu, Ming Xue, (2014) "Impacts of Mixing Processes in Nocturnal Atmospheric Boundary Layer on Urban Ozone Concentrations", Boundary-Layer Meteorology 150 / 1, 107-130. http://dx.doi.org/10.1007/s10546-013-9864-4
  • Xiao-Ming Hu, Petra M. Klein, Ming Xue, Fuqing Zhang, David C. Doughty, Renate Forkel, Everette Joseph, Jose D. Fuentes, (2013) "Impact of the vertical mixing induced by low-level jets on boundary layer ozone concentration", Atmospheric Environment 70 / undefined, 123-130. http://dx.doi.org/10.1016/j.atmosenv.2012.12.046
  • Ricardo Taborda (University of Memphis), Jacobo Bielak (Carnegie Mellon University), (2013) "Ground-Motion Simulation and Validation of the 2008 Chino Hills, California, Earthquake", Bulletin of the Seismological Society of America 103 / 1, 131-156. http://dx.doi.org/10.1785/0120110325
  • Jackson Massey (University of Texas at Austin), Fangzhou Wei (University of Texas at Austin), Ali Yilmaz (University of Texas at Austin), (July2013) "Mixed basis functions for fast analysis of antennas near voxel-based human models", 2013 USNC-URSI Radio Science Meeting (Joint with AP-S Symposium) Orlando, FL , . http://dx.doi.org/10.1109/USNC-URSI.2013.6715406
  • Fangzhou Wei (University of Texas at Austin), Ali Yilmaz (University of Texas at Austin), (September2012) "Surface-preconditioned AIM-accelerated surface-volume integral equation solution for bioelectromagnetics", 2012 International Conference on Electromagnetics in Advanced Applications Cape Town, South Africa , 869-872. http://dx.doi.org/10.1109/ICEAA.2012.6328757
  • Ricardo Taborda (University of Memphis), Jacobo Bielak (Carnegie Mellon University), (2011) "Large-Scale Earthquake Simulation: Computational Seismology and Complex Engineering Systems", Computing in Science & Engineering 13 / 4, 14-27. http://dx.doi.org/10.1109/MCSE.2011.19
  • Ricardo Taborda (University of Memphis), Jacobo Bielak (Carnegie Mellon University), Dorian Restrepo (Carnegie Mellon University), (2012) "Earthquake Ground-Motion Simulation including Nonlinear Soil Effects under Idealized Conditions with Application to Two Case Studies", Seismological Research Letters 83 / 6, 1047-1060. http://dx.doi.org/10.1785/0220120079
  • Davoud Ebrahimi, Roland J.-M. Pellenq, Andrew J. Whittle, (2012) "Nanoscale Elastic Properties of Montmorillonite upon Water Adsorption", Langmuir 28 / 49, 16855-16863. http://dx.doi.org/10.1021/la302997g
  • Davoud Ebrahimi, Andrew J. Whittle, Roland J.-M. Pellenq, (2014) "Mesoscale properties of clay aggregates from potential of mean force representation of interactions between nanoplatelets", The Journal of Chemical Physics 140 / 15, 154309. http://dx.doi.org/10.1063/1.4870932
  • S. Samudrala (Iowa State University), Olga Wodo (Iowa State University), S.K. Suram (Iowa State University), S. Broderick (Iowa State University), K. Rajan (Iowa State University), B. Ganapathysubramanian (Iowa State University), (2013) "A graph-theoretic approach for characterization of precipitates from atom probe tomography data", Computational Materials Science 77 / undefined, 335-342. http://dx.doi.org/10.1016/j.commatsci.2013.04.038
  • Phillip Dickens (University of Maine), Timothy Morey (University of Maine), (May2013) "Increasing the Scalability of PISM for High Resolution Ice Sheet Models", Workshop on Parallel and Distributed Scientific and Engineering Computing Boston, Mass , . http://cse.stfx.ca/~pdsec13/
  • Parvez Sukheswalla (Cornell University), (August2013) "Simulation of homogeneous turbulent shear flow at higher Reynolds numbers: numerical challenges and a remedy", Journal of Turbulence 14 / 5, 60-97. http://dx.doi.org/10.1080/14685248.2013.817677
  • Lauren Wickstrom, Peng He, Emilio Gallicchio, Ronald Levy (Rutgers, the State University of New Jersey), (2013) "Large scale affinity calculations of cyclodextrin host-guest complexes: understanding the role of reorganization in the molecular recognition process.", Journal of Chemical Theory and Computation , .
  • Zhiqiang Tan, Emilio Gallicchio, Mauro Lapelosa, Ronald Levy (Rutgers, the State University of New Jersey), (2012) "Theory of binless multi-state free energy estimation with applications to protein-ligand binding.", The Journal of Chemical Physics , .
  • Nan-jie Deng, Wei Dai, Ronald Levy (Rutgers, the State University of New Jersey), (2013) "How kinetics within the unfolded state affects protein folding: an anaylsis based on Markov state models and an ultra-long MD trajectory.", Journal of Physical Chemistry B , .
  • Olga Wodo (Iowa State University), Baskar Ganapathysubramanian (Iowa State University), (2011) "Computationally efficient solution to the Cahn–Hilliard equation: Adaptive implicit time schemes, mesh sensitivity analysis and the 3D isoperimetric problem", Journal of Computational Physics 230 / 15, 6037-6060. http://dx.doi.org/10.1016/j.jcp.2011.04.012
  • Fangzhou Wei (University of Texas at Austin), Ali Yilmaz (University of Texas at Austin), (July2013) "A scalable nested preconditioner for improving the AIM-accelerated analysis of antennas near the human body", 2013 USNC-URSI Radio Science Meeting (Joint with AP-S Symposium) Orlando, FL , 214-214. http://dx.doi.org/10.1109/USNC-URSI.2013.6715520
  • Mauro Lapelosa, Emilio Gallicchio, Ronald Levy (Rutgers, the State University of New Jersey), (2012) "Conformational transitions and convergence of absolute binding free energy calculations.", Journal of Chemical Theory and Computation , .
  • Emilio Gallicchio, Ronald Levy (Rutgers, the State University of New Jersey), (2012) "Prediction of SAMPL3 host-guest affinities with the binding energy distribution analysis method (BEDAM).", Journal of Computer-Aided Molecular Design , .
  • Matthew Small, Xin Yuan, (September2013) "A New Design of RDMA-based Small Message Channels for InfiniBand Clusters", International Conference on Cluster Computing Denver , .
  • Zheng Gu, Matthew Small, Xin Yuan, Aniruddha Marathe, David K. Lowenthal, (2013) "Protocol Customization for Improving MPI Performance on RDMA-Enabled Clusters", International Journal of Parallel Programming 41 / 5, 682-703. http://dx.doi.org/10.1007/s10766-013-0242-0
  • Yifeng Cui (University of California-San Diego), Reagan Moore (San Diego Supercomputer Center), Kim Olsen (San Diego State University), Amit Chourasia (University of California-San Diego), Philip Maechling (University of Southern California), Jean-Bernard Minster (Scripps Institution of Oceanography), Steven Day (San Diego State University), Yuanfang Hu (San Diego Supercomputer Center), Jing Zhu (San Diego Supercomputer Center), Thomas Jordan (University of Southern California), (July2009) "Toward petascale earthquake simulations", Acta Geotechnica 4 / 2, 79-93. http://dx.doi.org/10.1007/s11440-008-0055-2
  • Zhiling Lan (Illinois Institute of Technology), Jingjin Wu (Illinois Institute of Technology), (November2012) "Hierarchical Task Mapping of Cell-based AMR Cosmology Simulations", SC Salt Lake, UT , .
  • Cemil S. Geyik, Fangzhou Wei (University of Texas at Austin), Jackson Massey (University of Texas at Austin), Ali Yilmaz (University of Texas at Austin), (July2012) "FDTD vs. AIM for bioelectromagnetic analysis", Proceedings of the 2012 IEEE International Symposium on Antennas and Propagation Chicago, IL , 1-2. http://dx.doi.org/10.1109/APS.2012.6348964
  • Zheqiang Shi (San Diego State University), Steven M. Day, (March2013) "Rupture dynamics and ground motion from 3-D rough-fault simulations", Journal of Geophysical Research: Solid Earth 118 / 3, 1122-1141. http://dx.doi.org/10.1002/jgrb.50094
  • Fangzhou Wei (University of Texas at Austin), Jackson W. Massey, Cemil S. Geyik, Ali Yilmaz (University of Texas at Austin), (July2012) "Error measures for comparing bioelectromagnetic simulators", Proceedings of the 2012 IEEE International Symposium on Antennas and Propagation Chicago, IL , 1-2. http://dx.doi.org/10.1109/APS.2012.6348016
  • Pui-kuen Yeung (Georgia Institute of Technology), Diego Donzis (Texas A&M University), K. R. Sreenivasan, (June2012) "Dissipation, enstrophy and pressure statistics in turbulence simulations at high Reynolds numbers", Journal of Fluid Mechanics 700 / undefined, 5-15. http://dx.doi.org/10.1017/jfm.2012.5
  • Jacobo Bielak (Carnegie Mellon University), Robert Graves (US Geological Survey), Kim Olsen (San Diego State University), Ricardo Taborda (Carnegie Mellon University), Leonardo Ramirez-Guzman (US Geological Survey), Steven Day (San Diego State University), Geoffrey Ely (Argonne National Laboratory), Daniel Roten (ETH Zurich), Thomas Jordan (University of Southern California), Philip Maechling (University of Southern California), John Urbanic (Pittsburgh Supercomputing Center), Yifeng Cui (University of California-San Diego), Gideon Juve (University of Southern California), (November2009) "The ShakeOut earthquake scenario: Verification of three simulation sets", Geophysical Journal International 180 / 1, 375-404. http://dx.doi.org/10.1111/j.1365-246X.2009.04417.x